[slurm-users] JobState of RaisedSignal:53 Real-time_signal_19; slurm 23.02.4

Robert Kudyba rkudyba at fordham.edu
Fri Nov 10 18:25:54 UTC 2023

The user is launching a Singularity container for RStudio and the final
option for --rsession-path does not exist.

scontrol show job 420719
JobId=420719 JobName=r2.sbatch
  UserId=ouruser(552199) GroupId=user(500) MCS_label=N/A
  Priority=1428 Nice=0 Account=ouracct QOS=xxx
  JobState=FAILED Reason=RaisedSignal:53(Real-time_signal_19)

>From slurmctld.log:
[2023-11-10T11:40:20.569] _slurm_rpc_submit_batch_job: JobId=420719
InitPrio=1428 usec=272
[2023-11-10T11:40:20.973] sched: Allocate JobId=420719 NodeList=node001
#CPUs=2 Partition=xxx
[2023-11-10T11:40:21.143] _job_complete: JobId=420719 WTERMSIG 53
[2023-11-10T11:40:21.144] _job_complete: JobId=420719 done

I think I may know the reason but wanted to see if this error meant
something else.Here is the snippet in the sbatch file:

singularity exec --cleanenv rstudio_4.2.sif \
  /usr/lib/rstudio-server/bin/rserver --www-port ${PORT} \
      --auth-none=0 \
      --auth-pam-helper-path=pam-helper \
      --auth-stay-signed-in-days=30 \
      --auth-timeout-minutes=0 \
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