[slurm-users] Secondary Unix group id of users not being issued in interactive srun command

Russell Jones arjones85 at gmail.com
Mon Jan 31 15:16:19 UTC 2022


I solved this issue by adding a group to IPA that matched the same name and
GID of the local groups, then using [SUCCESS=merge] in nsswitch.conf for
groups, and on our CentOS 8 nodes adding "enable_files_domain = False" in
the sssd.conf file*.*

On Fri, Jan 28, 2022 at 5:02 PM Ratnasamy, Fritz <
fritz.ratnasamy at chicagobooth.edu> wrote:

> Hi Mitchell, Remi
>
> This is what returned the command:  find /sys/fs/cgroup -name "*71953*"
> /sys/fs/cgroup/freezer/slurm/uid_71953
> /sys/fs/cgroup/devices/slurm/uid_71953
> /sys/fs/cgroup/cpuset/slurm/uid_71953
> /sys/fs/cgroup/cpu,cpuacct/slurm/uid_71953
> /sys/fs/cgroup/memory/slurm/uid_71953
>
> Do you have any idea what could cause the issue?
> Thanks,
>
> *Fritz Ratnasamy*
>
> Data Scientist
>
> Information Technology
>
> The University of Chicago
>
> Booth School of Business
>
> 5807 S. Woodlawn
>
> Chicago, Illinois 60637
>
> Phone: +(1) 773-834-4556
>
>
> On Fri, Jan 28, 2022 at 12:01 PM Walls, Mitchell <miwalls at siue.edu> wrote:
>
>> Do you see the uid in /sys/fs/cgroup? (i.e. find /sys/fs/cgroup -name
>> "*71953*"). If not that could point to cgroup config.
>>
>> ________________________________________
>> From: slurm-users <slurm-users-bounces at lists.schedmd.com> on behalf of
>> Ratnasamy, Fritz <fritz.ratnasamy at chicagobooth.edu>
>> Sent: Friday, January 28, 2022 11:13 AM
>> To: Rémi Palancher; Slurm User Community List; James Millsap
>> Subject: Re: [slurm-users] Secondary Unix group id of users not being
>> issued in interactive srun command
>>
>> Hi Remi,
>>
>>  Yes it does return the same id. See below:
>> johndoe at ecolonnelli:~ $ id
>> uid=71953(johndoe) gid=100026(Faculty_Collab)
>> groups=100026(Faculty_Collab),100181(ecolonnelli_access)
>> johndoe at ecolonnelli:~ $ id johndoe
>> uid=71953(johndoe) gid=100026(Faculty_Collab)
>> groups=100026(Faculty_Collab),1000(projectsbrasil),1003(core),1549(rais),1550(rfb),1552(polconnfirms),1558(vpce),1559(rfb_all),1563(johndoe),100181(ecolonnelli_access)
>>
>> Fritz Ratnasamy
>> Data Scientist
>> Information Technology
>> The University of Chicago
>> Booth School of Business
>> 5807 S. Woodlawn
>> Chicago, Illinois 60637
>> Phone: +(1) 773-834-4556
>>
>>
>> On Fri, Jan 28, 2022 at 2:04 AM Rémi Palancher <remi at rackslab.io<mailto:
>> remi at rackslab.io>> wrote:
>> Le vendredi 28 janvier 2022 à 06:56, Ratnasamy, Fritz <
>> fritz.ratnasamy at chicagobooth.edu<mailto:fritz.ratnasamy at chicagobooth.edu>>
>> a écrit :
>>
>> > Hi,
>> >
>> > I have a similar issue as described on the following link (
>> https://groups.google.com/g/slurm-users/c/6SnwFV-S_Nk)A machine had some
>> existing local permissions. We have added it as a compute node to our
>> cluster via Slurm. When running an srun interactive session on that
>> server,it would seem that the LDAP groups shadow the local groups.
>> >
>> > johndoe at ecolonnelli:~ $ groups
>> >
>> > Faculty_Collab ecolonnelli_access #Those are LDAP groups
>> >
>> > johndoe at ecolonnelli:~ $ groups johndoe
>> >
>> > johndoe : Faculty_Collab projectsbrasil core rais rfb polconnfirms
>> johndoe vpce rfb_all backup_johndoe ecolonnelli_access
>>
>> The difference between the first and the second command could be the UID
>> used for the resolution. The first command calls getgroups() syscall using
>> the UID of the shell. The second command resolves johndoe UID through
>> nsswitch stack then looks after the groups of this UID.
>>
>> Do you have johndoe declared in both local /etc/passwd and LDAP directory
>> with different UID?
>>
>> Do `id` and `id johndoe` return the same UID?
>>
>> --
>> Rémi Palancher
>> Rackslab: Open Source Solutions for HPC Operations
>> https://rackslab.io
>>
>>
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>>
>>
>> CAUTION: This email has originated outside of University email systems.
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