[slurm-users] Trouble installing slurm-19.05.1-2.el7.centos.x86_64

Thu Aug 15 15:18:36 UTC 2019

 >I have tried running ldconfig manually as suggested with  slurm-19.05.1-2 and it fails the same way... >error: Failed dependencies:>        libnvidia-ml.so.1()(64bit) is needed by slurm-19.05.1-2.el7.centos.x86_64  
Lou, that's a packaging mistake on the part of the person who created that el7 centos bundle.  What no doubt happenedwas that he/she had the nvidia proprietary libs/headers installed on the machine when he configured slurm.  That causedslurm to see the nvidia drivers and configure for them, thus causing everyone who installed that package to require the nvidia library.   That's definitely a bug from a licensing perspective since nvidia is a closed, proprietary driver. 
If someone absolutely forced you to use that slurm bundle, you could install the nvidia prop driver separately --perhaps through a repo like negativo17's, but that will taint your kernel.  
I would inform the packager that they made a mistake.

    On Thursday, August 15, 2019, 10:55:30 AM EDT, Lou Nicotra <lnicotra at interactions.com> wrote:  

 I have tried running ldconfig manually as suggested with slurm-19.05.1-2 and it fails the same way... error: Failed dependencies:
        libnvidia-ml.so.1()(64bit) is needed by slurm-19.05.1-2.el7.centos.x86_64  

ldconfig -p shows:root at panther02 slurm# ldconfig -p|grep libnvidia-ml.
        libnvidia-ml.so.1 (libc6,x86-64) => /usr/lib64/libnvidia-ml.so.1
        libnvidia-ml.so.1 (libc6) => /lib/libnvidia-ml.so.1
        libnvidia-ml.so (libc6,x86-64) => /usr/lib64/libnvidia-ml.so
        libnvidia-ml.so (libc6) => /lib/libnvidia-ml.so

Just tried the latest release slurm-19.05.2 and it fails in the same way... root at panther02 x86_64# rpm -Uvh slurm-19.05.2-1.el7.centos.x86_64.rpm
error: Failed dependencies:
        libnvidia-ml.so.1()(64bit) is needed by slurm-19.05.2-1.el7.centos.x86_64

Reinstalled slurm-18.08.8 and it installs with no issues... Just like slurm-18.08.03 and slurm-18.08.4 did...  All built on the same machine with rpmbuild -ta command...root at panther02 slurm-18.08.8# rpm -Uvh slurm-18.08.8-1.el7.centos.x86_64.rpm
Preparing...                          ################################# [100%]
Updating / installing...
   1:slurm-18.08.8-1.el7.centos       ################################# [100%]

Oh, well...
Lou

On Mon, Aug 12, 2019 at 1:32 AM Barbara Krašovec <barbara.krasovec at ijs.si> wrote:

What if you try to run ldconfig manually before building the rpm?

Cheers,

Barbara

 On 8/8/19 5:57 PM, Lou Nicotra wrote:

 I am running into an error while trying to install slurm-19.05.1-2.el7.centos.x86_64... Error is as follows: root at panther02 x86_64# rpm -Uvh slurm-19.05.1-2.el7.centos.x86_64.rpm
 error: Failed dependencies:
         libnvidia-ml.so.1()(64bit) is needed by slurm-19.05.1-2.el7.centos.x86_64 
  Packages are built using rpmbuild... And complete with no errors... + cd /root/rpmbuild/BUILD
 + cd slurm-19.05.1-2
 + rm -rf /root/rpmbuild/BUILDROOT/slurm-19.05.1-2.el7.centos.x86_64
 + exit 0

  Investigation of the output while building the rpm package shows that nvidia-ml is found: checking for nvmlInit in -lnvidia-ml... yes
  . . libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -I/usr/local/cuda/include -I/usr/cuda/include -DNUMA_VERSION1_COMPATIBILITY -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64  -mtune=generic -pthread -ggdb3 -Wall -g -O1 -fno-strict-aliasing -c gpu_nvml.c  -fPIC -DPIC -o .libs/gpu_nvml.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -I/usr/local/cuda/include -I/usr/cuda/include -DNUMA_VERSION1_COMPATIBILITY -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64  -mtune=generic -pthread -ggdb3 -Wall -g -O1 -fno-strict-aliasing -c gpu_nvml.c -o gpu_nvml.o >/dev/null 2>&1
 /bin/sh ../../../../libtool  --tag=CC   --mode=link gcc  -DNUMA_VERSION1_COMPATIBILITY -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -pthread -ggdb3 -Wall -g -O1 -fno-strict-aliasing -module -avoid-version --export-dynamic -Wl,-z,relro   -o gpu_nvml.la -rpath /usr/lib64/slurm gpu_nvml.lo -lnvidia-ml
 libtool: link: gcc -shared  -fPIC -DPIC  .libs/gpu_nvml.o   -lnvidia-ml  -O2 -g -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -pthread -ggdb3 -g -O1 -Wl,-z -Wl,relro   -pthread -Wl,-soname -Wl,gpu_nvml.so -o .libs/gpu_nvml.so

 The Makefile in /root/rpmbuild/BUILD/slurm-19.05.1-2/src  includes: NVML_LIBS = -lnvidia-ml but previous releases did not (slurm-18.08.8) And I was able to compile and install that release with no issues after building it with rpmbuild... 
  My LD_LIBRARY_PATH is/usr/lib64:/usr/lib:/usr/local/lib64:/usr/local/lib:/var/local/miniconda2/lib/: 
  Can anyone provide suggestions on working out this issue? 
  Thanks.  -- 

LOU NICOTRA

IT Systems Engineer - SLT

Interactions LLC

o:  908-673-1833

m: 908-451-6983

lnicotra at interactions.com
 www.interactions.com

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-- 

LOU NICOTRA

IT Systems Engineer -SLT

Interactions LLC

o:  908-673-1833

m: 908-451-6983

lnicotra at interactions.com
www.interactions.com

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This e-mail and any of its attachments may containInteractions LLC proprietary information, which is privileged,confidential, or subject to copyright belonging to the InteractionsLLC. This e-mail is intended solely for the use of the individual orentity to which it is addressed. If you are not the intended recipient of thise-mail, you are hereby notified that any dissemination, distribution, copying,or action taken in relation to the contents of and attachments to this e-mailis strictly prohibited and may be unlawful. If you have received this e-mail inerror, please notify the sender immediately and permanently delete the originaland any copy of this e-mail and any printout. Thank You.  

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