- slurm-users - lists.schedmd.com

Difference between sreport's cpu time usage and sacct -j usage
by KK 14 Dec '24

14 Dec '24

Hi all, I have observed a significant discrepancy in CPU usage time calculations between sreport and sacct, and I would like to understand the underlying cause. Let me share the specific case I encountered when calculating CPU usage time for user zt23132881r from November 1, 2024, to November 30, 2024. 1. sreport Results (995,171 minutes): -------------------------------------------------------------------------------- *[root@master ~]# sreport Cluster UserUtilizationByAccount user=… [View More]

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Node configuration unavailable when using --mem-per-gpu , for specific GPU type
by Matthew R. Baney 13 Dec '24

13 Dec '24

Hi all, I'm seeing some odd behavior when using the --mem-per-gpu flag instead of the --mem flag to request memory when also requesting all available CPUs on a node (in this example, all available nodes have 32 CPUs): $ srun --ntasks-per-node=8 --cpus-per-task=4 --gpus-per-node=gtx1080ti:1 --mem-per-gpu=1g --pty bash srun: error: Unable to allocate resources: Requested node configuration is not available $ srun --ntasks-per-node=8 --cpus-per-task=4 --gpus-per-node=gtx1080ti:1 --mem=1g --pty … [View More]

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Adding gres usage to the accounting database
by Mark Dixon 13 Dec '24

13 Dec '24

Hello! Our jobs can ask for dedicated per-node disk space, e.g. "--gres=tmp:1G", where an ephemeral directory is managed by the site prolog/epilog and usage is capped using an xfs project quota. This works well, although we really need to look at job_container/tmpfs. I note that slurm already periodically polls jobs for their memory usage, which finds its way into the accounting database tres_usage fields. What would be really nice is if we could extend this polling so that we feed our … [View More]

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Slurm version 24.05.5 is now available
by Marshall Garey 12 Dec '24

12 Dec '24

We are pleased to announce the availability of Slurm version 24.05.5. This release fixes a few potential crashes, several stepmgr bugs, compatibility for sstat and sattach with newer version steps, and some other minor bugs. Downloads are available at https://www.schedmd.com/downloads.php . -- Marshall Garey Release Management, Support, and Development SchedMD LLC - Commercial Slurm Development and Support > * Changes in Slurm 24.05.5 > ========================== > -- Fix issue … [View More]

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node3 not working - down
by Steven Jones 10 Dec '24

10 Dec '24

Hi, As suggested, 8><--- Stop their services, start them manually one by one (ctld first), then watch whether they talk to each other, and if they don't, learn what stops them from doing so - then iterate editing the config, "scontrol reconfig", lather, rinse, repeat. 8><--- Error logs, On node3, ======== [2024-12-09T21:43:10.694] slurmd started on Mon, 09 Dec 2024 21:43:10 +0000 [2024-12-09T21:43:10.694] CPUs=20 Boards=1 Sockets=20 Cores=1 Threads=1 Memory=48269 TmpDisk=23308 … [View More]Uptime=3703 CPUSpecList=(null) FeaturesAvail=(null) FeaturesActive=(null) [2024-12-09T23:38:56.645] error: Munge decode failed: Rewound credential [2024-12-09T23:38:56.645] auth/munge: _print_cred: ENCODED: Tue Dec 10 23:38:30 2024 [2024-12-09T23:38:56.645] auth/munge: _print_cred: DECODED: Mon Dec 09 23:38:56 2024 [2024-12-09T23:38:56.645] error: Check for out of sync clocks [2024-12-09T23:38:56.645] error: slurm_receive_msg_and_forward: g_slurm_auth_verify: REQUEST_PING has authentication error: Invalid authentication credential [2024-12-09T23:38:56.645] error: slurm_receive_msg_and_forward: Protocol authentication error [2024-12-09T23:38:56.655] error: service_connection: slurm_receive_msg: Protocol authentication error [2024-12-10T01:13:18.454] Slurmd shutdown completing ====== I have checked the time, this is fine munge.key I ran md5sum over it and get the same output. When I reboot the warewulf nodes its a common Container file so 1~2 working but not 3 is just wierd. On the controller, ========= [2024-12-10T01:30:35.108] Node node2 appears to have a different version of Slurm than ours. Please update at your earliest convenience. [2024-12-10T01:30:35.109] Node node1 appears to have a different version of Slurm than ours. Please update at your earliest convenience. [2024-12-10T01:30:35.109] Node node6 appears to have a different version of Slurm than ours. Please update at your earliest convenience. [2024-12-10T01:30:35.109] Node node7 appears to have a different version of Slurm than ours. Please update at your earliest convenience. [2024-12-10T01:30:35.110] Node node3 appears to have a different version of Slurm than ours. Please update at your earliest convenience. [2024-12-10T01:30:35.110] Node node5 appears to have a different version of Slurm than ours. Please update at your earliest convenience. [2024-12-10T01:30:35.110] Node node4 appears to have a different version of Slurm than ours. Please update at your earliest convenience. [2024-12-10T01:30:36.104] SchedulerParameters=default_queue_depth=100,max_rpc_cnt=0,max_sched_time=2,partition_job_depth=0,sched_max_job_start=0,sched_min_interval=2 ========== So the controller is RHEL9 and the nodes Rocky8 However 1~2 and 4~7 work OK. When I run, [root@vuwunicoslurmd1 log]# scontrol show node node3 NodeName=node3 Arch=x86_64 CoresPerSocket=1 CPUAlloc=0 CPUEfctv=20 CPUTot=20 CPULoad=0.00 AvailableFeatures=(null) ActiveFeatures=(null) Gres=(null) NodeAddr=node3 NodeHostName=node3 Version=20.11.9 OS=Linux 4.18.0-553.30.1.el8_10.x86_64 #1 SMP Tue Nov 26 18:56:25 UTC 2024 RealMemory=48000 AllocMem=0 FreeMem=43378 Sockets=20 Boards=1 State=DOWN ThreadsPerCore=1 TmpDisk=0 Weight=1 Owner=N/A MCS_label=N/A Partitions=debug BootTime=2024-12-09T20:41:27 SlurmdStartTime=2024-12-10T01:13:25 LastBusyTime=2024-12-10T01:30:31 CfgTRES=cpu=20,mem=48000M,billing=20 AllocTRES= CapWatts=n/a CurrentWatts=0 AveWatts=0 ExtSensorsJoules=n/s ExtSensorsWatts=0 ExtSensorsTemp=n/s Reason=Node unexpectedly rebooted [slurm@2024-12-09T20:40:27] [root@vuwunicoslurmd1 log]# I get a reason, its like the node is held down / off, does this need to be / can this be cleared? regards Steven [View Less]

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Job not starting
by Diego Zuccato 10 Dec '24

10 Dec '24

Hello all. An user reported that a job wasn't starting, so I tried to replicate the request and I get: -8<-- [root@ophfe1 root.old]# scontrol show job 113936 JobId=113936 JobName=test.sh UserId=root(0) GroupId=root(0) MCS_label=N/A Priority=1 Nice=0 Account=root QOS=long JobState=PENDING Reason=Priority Dependency=(null) Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0 RunTime=00:00:00 TimeLimit=2-00:00:00 TimeMin=N/A SubmitTime=2024-12-06T13:19:36 EligibleTime=… [View More]2024-12-06T13:19:36 AccrueTime=2024-12-06T13:19:36 StartTime=Unknown EndTime=Unknown Deadline=N/A SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-12-06T13:21:32 Scheduler=Backfill:* Partition=m3 AllocNode:Sid=ophfe1:855189 ReqNodeList=(null) ExcNodeList=(null) NodeList= NumNodes=1-1 NumCPUs=96 NumTasks=96 CPUs/Task=1 ReqB:S:C:T=0:0:*:* TRES=cpu=96,mem=95000M,node=1,billing=1296 Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=* MinCPUsNode=1 MinMemoryNode=95000M MinTmpDiskNode=0 Features=(null) DelayBoot=00:00:00 OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null) Command=/home/root.old/test.sh WorkDir=/home/root.old StdErr=/home/root.old/%N-%J.err StdIn=/dev/null StdOut=/home/root.old/%N-%J.out Power= [root@ophfe1 root.old]# scontrol sho partition m3 PartitionName=m3 AllowGroups=ALL DenyAccounts=formazione AllowQos=ALL AllocNodes=ALL Default=NO QoS=N/A DefaultTime=NONE DisableRootJobs=NO ExclusiveUser=NO GraceTime=0 Hidden=NO MaxNodes=UNLIMITED MaxTime=UNLIMITED MinNodes=0 LLN=NO MaxCPUsPerNode=UNLIMITED Nodes=mtx20 PriorityJobFactor=1 PriorityTier=1 RootOnly=NO ReqResv=NO OverSubscribe=NO OverTimeLimit=NONE PreemptMode=CANCEL State=UP TotalCPUs=192 TotalNodes=1 SelectTypeParameters=CR_SOCKET_MEMORY JobDefaults=(null) DefMemPerNode=UNLIMITED MaxMemPerNode=UNLIMITED TRES=cpu=192,mem=1150000M,node=1,billing=2592 TRESBillingWeights=CPU=13.500,Mem=2.2378G [root@ophfe1 root.old]# scontrol show node mtx20 NodeName=mtx20 Arch=x86_64 CoresPerSocket=24 CPUAlloc=0 CPUEfctv=192 CPUTot=192 CPULoad=0.00 AvailableFeatures=ib,matrix,intel,avx ActiveFeatures=ib,matrix,intel,avx Gres=(null) NodeAddr=mtx20 NodeHostName=mtx20 Version=22.05.6 OS=Linux 4.18.0-372.9.1.el8.x86_64 #1 SMP Tue May 10 14:48:47 UTC 2022 RealMemory=1150000 AllocMem=0 FreeMem=1156606 Sockets=4 Boards=1 MemSpecLimit=2048 State=IDLE ThreadsPerCore=2 TmpDisk=0 Weight=8 Owner=N/A MCS_label=N/A Partitions=m3 BootTime=2024-12-06T10:01:42 SlurmdStartTime=2024-12-06T10:02:54 LastBusyTime=2024-12-06T10:51:58 CfgTRES=cpu=192,mem=1150000M,billing=2592 AllocTRES= CapWatts=n/a CurrentWatts=0 AveWatts=0 ExtSensorsJoules=n/s ExtSensorsWatts=0 ExtSensorsTemp=n/s -8<-- So the node is free, the partition does not impose extra limits (used only for accounting factors) but the job does not start. Any hints? Tks -- Diego Zuccato DIFA - Dip. di Fisica e Astronomia Servizi Informatici Alma Mater Studiorum - Università di Bologna V.le Berti-Pichat 6/2 - 40127 Bologna - Italy tel.: +39 051 20 95786 [View Less]

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TRES cpu vs tasks
by Miriam Olmi 10 Dec '24

10 Dec '24

Hi all, I cannot understand the true difference and definition of "core", "task" and "cpu" within the limits associated to a partition via the TRES variable of a QOS. More precisely I have 2 partitions defined as follows: PartitionName=lprod AllowGroups=ALL AllowAccounts=ALL AllowQos=ALL AllocNodes=ALL Default=NO QoS=lprod_part DefaultTime=NONE DisableRootJobs=NO ExclusiveUser=NO GraceTime=0 Hidden=NO MaxNodes=UNLIMITED MaxTime=1-00:… [View More]00:00 MinNodes=0 LLN=NO MaxCPUsPerNode=UNLIMITED MaxCPUsPerSocket=UNLIMITED Nodes=r037c01s[01-12] PriorityJobFactor=1 PriorityTier=1 RootOnly=NO ReqResv=NO OverSubscribe=NO OverTimeLimit=NONE PreemptMode=OFF State=UP TotalCPUs=432 TotalNodes=12 SelectTypeParameters=NONE JobDefaults=(null) DefMemPerNode=UNLIMITED MaxMemPerNode=UNLIMITED TRES=cpu=432,mem=12M,node=12,billing=432 PartitionName=bprod AllowGroups=ALL AllowAccounts=ALL AllowQos=ALL AllocNodes=ALL Default=NO QoS=bprod_part DefaultTime=NONE DisableRootJobs=NO ExclusiveUser=NO GraceTime=0 Hidden=NO MaxNodes=UNLIMITED MaxTime=1-00:00:00 MinNodes=0 LLN=NO MaxCPUsPerNode=UNLIMITED MaxCPUsPerSocket=UNLIMITED Nodes=r037c01s[01-12] PriorityJobFactor=1 PriorityTier=1 RootOnly=NO ReqResv=NO OverSubscribe=NO OverTimeLimit=NONE PreemptMode=OFF State=UP TotalCPUs=432 TotalNodes=12 SelectTypeParameters=NONE JobDefaults=(null) DefMemPerNode=UNLIMITED MaxMemPerNode=UNLIMITED TRES=cpu=432,mem=12M,node=12,billing=432 with the two qos defined as: Name Priority GraceTime PreemptMode UsageFactor MaxJobsPU MaxSubmitPU MaxTRES MinTRES Flags -------------------- ---------- ---------- ----------- ----------- --------- ----------- -------------------- -------------------- -------------------------------------------------- lprod_part 0 00:00:00 cluster 1.000000 100 120 cpu=32,mem=366G cpu=1 DenyOnLimit,PartitionMaxNodes,PartitionMinNodes bprod_part 0 00:00:00 cluster 1.000000 100 120 cpu=64,mem=366G cpu=33 DenyOnLimit,OverPartQOS If I try to submit a job on the lprod partition with the directives: #SBATCH --nodes=12 #SBATCH --ntasks-per-node=1 the job is executed correctly while it is not executed if submitted on the bprod partition due to the error: sbatch: error: QOSMinCpuNotSatisfied sbatch: error: Batch job submission failed: Job violates accounting/QOS policy (job submit limit, user's size and/or time limits) I understand that this is related to the limit of cpu associated to the partition via the qos: lprod->[1-32]cpus, bprod->[33-64]cpus but I would like to have a more proper explanation since the options I am using are not referring to "cpu" but to "tasks" and I could not find a proper definition of "cpu" in the framework of the TRES. Many thanks in advance. Best, Miriam [View Less]

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slurm nodes showing down*
by Steven Jones 09 Dec '24

09 Dec '24

I have just rebuilt all my nodes and I see Only 1 & 2 seem available? While 3~6 are not 3's log, [root@node3 log]# tail slurmd.log [2024-12-08T21:45:51.250] CPU frequency setting not configured for this node [2024-12-08T21:45:51.251] slurmd version 20.11.9 started [2024-12-08T21:45:51.252] slurmd started on Sun, 08 Dec 2024 21:45:51 +0000 [2024-12-08T21:45:51.252] CPUs=20 Boards=1 Sockets=20 Cores=1 Threads=1 Memory=48269 TmpDisk=23324 Uptime=30 CPUSpecList=(null) FeaturesAvail=(null) … [View More]

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error and output files
by michaelmorgan937＠gmail.com 09 Dec '24

09 Dec '24

Hi all, I have a program (for example x.x). When I run it as "x.x -I input -o output", I will get an "output" file, as well as output and error files from slurm. However, all the content of slurm output file is in the "output" file (and there are some extra content), so it is a waste to print the slurm output. Is it possible to set directives so that slurm only print error file? Thank you very much. Michael Morgan

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Why is my job killed when ResumeTimeout is reached instead of it being requeued?
by Xaver Stiensmeier 09 Dec '24

09 Dec '24

Dear Slurm-user list, when a job fails because the node startup fails (cloud scheduling), the job should be re-queued: Resume Timeout Maximum time permitted (in seconds) between when a node resume request is issued and when the node is actually available for use. Nodes which fail to respond in this time frame will be marked DOWN and the jobs scheduled on the node requeued. however, instead of requeuing the job, it is killed. [2024-11-18T10:41:52.003] node bibigrid-worker-… [View More]wubqboa1z2kkgx0-0 not resumed by ResumeTimeout(1200) - marking down and power_save [2024-11-18T10:41:52.003] Killing JobId=1 on failed node bibigrid-worker-wubqboa1z2kkgx0-0 [2024-11-18T10:41:52.046] update_node: node bibigrid-worker-wubqboa1z2kkgx0-0 reason set to: FailedStartup [2024-11-18T10:41:52.046] power down request repeating for node bibigrid-worker-wubqboa1z2kkgx0-0 Our ResumeProgram does not change the state of the underlying workers, I think we should set the nodes to DOWN explicitly if the startup fails given: *ResumeProgram* is unable to restore a node to service with a responding slurmd and an updated BootTime, it should set the node state to DOWN, which will result in a requeue of any job associated with the node - this will happen automatically if the node doesn't register within ResumeTimeout but in any case as we can see in the log the job should be requeued based on it reaching the ResumeTimeout alone. I am unsure why that is not happening. The power down request is sent by the ResumeFailProgram. We have SlurmctldParameters=idle_on_node_suspend activated, but that shouldn't affect Resume, I guess. My Slurm version is slurm 23.11.5 Best regards, Xaver # More context ## Slurmctld from submitting job to failure [2024-11-18T10:21:45.490] sched: _slurm_rpc_allocate_resources JobId=1 NodeList=bibigrid-worker-wubqboa1z2kkgx0-0 usec=1221 [2024-11-18T10:21:45.499] debug: sackd_mgr_dump_state: saved state of 0 nodes [2024-11-18T10:21:58.387] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:21:58.387] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:22:20.003] debug: sched: Running job scheduler for full queue. [2024-11-18T10:23:20.003] debug: sched: Running job scheduler for full queue. [2024-11-18T10:23:20.009] debug: sackd_mgr_dump_state: saved state of 0 nodes [2024-11-18T10:23:23.003] debug: Spawning ping agent for bibigrid-master-wubqboa1z2kkgx0 [2024-11-18T10:23:23.398] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:23:23.398] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:23:53.398] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:23:53.398] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:24:21.000] debug: sched: Running job scheduler for full queue. [2024-11-18T10:24:21.484] slurmscriptd: error: _run_script: JobId=0 resumeprog exit status 1:0 [2024-11-18T10:25:20.003] debug: sched: Running job scheduler for full queue. [2024-11-18T10:26:02.000] debug: Spawning ping agent for bibigrid-master-wubqboa1z2kkgx0 [2024-11-18T10:26:02.417] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:26:02.417] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:26:20.007] debug: sched: Running job scheduler for full queue. [2024-11-18T10:26:32.417] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:26:32.417] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:27:20.003] debug: sched: Running job scheduler for full queue. [2024-11-18T10:28:20.003] debug: Updating partition uid access list [2024-11-18T10:28:20.003] debug: sched: Running job scheduler for full queue. [2024-11-18T10:28:20.008] debug: sackd_mgr_dump_state: saved state of 0 nodes [2024-11-18T10:29:20.003] debug: sched: Running job scheduler for full queue. [2024-11-18T10:29:22.000] debug: Spawning ping agent for bibigrid-master-wubqboa1z2kkgx0 [2024-11-18T10:29:22.448] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:29:22.448] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:30:20.007] debug: sched: Running job scheduler for full queue. [2024-11-18T10:31:20.003] debug: sched: Running job scheduler for full queue. [2024-11-18T10:32:21.000] debug: sched: Running job scheduler for full queue. [2024-11-18T10:32:42.000] debug: Spawning ping agent for bibigrid-master-wubqboa1z2kkgx0 [2024-11-18T10:32:42.478] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:32:42.478] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:33:12.479] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:33:12.479] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:33:20.003] debug: sched: Running job scheduler for full queue. [2024-11-18T10:33:20.010] debug: sackd_mgr_dump_state: saved state of 0 nodes [2024-11-18T10:34:20.003] debug: sched: Running job scheduler for full queue. [2024-11-18T10:35:20.007] debug: sched: Running job scheduler for full queue. [2024-11-18T10:36:01.004] debug: Spawning ping agent for bibigrid-master-wubqboa1z2kkgx0 [2024-11-18T10:36:01.504] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:36:01.504] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:36:20.003] debug: sched: Running job scheduler for full queue. [2024-11-18T10:36:31.505] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:36:31.505] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:37:21.000] debug: sched: Running job scheduler for full queue. [2024-11-18T10:38:20.008] debug: Updating partition uid access list [2024-11-18T10:38:20.008] debug: sched: Running job scheduler for full queue. [2024-11-18T10:38:20.017] debug: sackd_mgr_dump_state: saved state of 0 nodes [2024-11-18T10:39:20.003] debug: sched: Running job scheduler for full queue. [2024-11-18T10:39:21.003] debug: Spawning ping agent for bibigrid-master-wubqboa1z2kkgx0 [2024-11-18T10:39:21.530] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:39:21.530] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:39:51.531] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:39:51.531] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:40:21.000] debug: sched: Running job scheduler for full queue. [2024-11-18T10:41:20.003] debug: sched: Running job scheduler for full queue. [2024-11-18T10:41:52.003] node bibigrid-worker-wubqboa1z2kkgx0-0 not resumed by ResumeTimeout(1200) - marking down and power_save [2024-11-18T10:41:52.003] Killing JobId=1 on failed node bibigrid-worker-wubqboa1z2kkgx0-0 [2024-11-18T10:41:52.046] update_node: node bibigrid-worker-wubqboa1z2kkgx0-0 reason set to: FailedStartup [2024-11-18T10:41:52.046] power down request repeating for node bibigrid-worker-wubqboa1z2kkgx0-0 [2024-11-18T10:41:52.047] debug: sackd_mgr_dump_state: saved state of 0 nodes [2024-11-18T10:41:52.549] debug: sched/backfill: _attempt_backfill: beginning [2024-11-18T10:41:52.549] debug: sched/backfill: _attempt_backfill: no jobs to backfill [2024-11-18T10:41:52.736] _slurm_rpc_complete_job_allocation: JobId=1 error Job/step already completing or completed [2024-11-18T10:41:53.000] debug: Spawning ping agent for bibigrid-master-wubqboa1z2kkgx0 [2024-11-18T10:41:53.000] debug: sched: Running job scheduler for default depth. [2024-11-18T10:41:53.014] update_node: node bibigrid-worker-wubqboa1z2kkgx0-0 reason set to: FailedStartup [2024-11-18T10:41:53.014] update_node: node bibigrid-worker-wubqboa1z2kkgx0-0 state set to IDLE [View Less]

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