June 2024 - slurm-users - lists.schedmd.com

How to exclude master from computing? Set to DRAINED?
by Xaver Stiensmeier 24 Jun '24

24 Jun '24

Dear Slurm users, in our project we exclude the master from computing before starting Slurmctld. We used to exclude the master from computing by simply not mentioning it in the configuration i.e. just not having: PartitionName=SomePartition Nodes=master or something similar. Apparently, this is not the way to do this as it is now a fatal error fatal: Unable to determine this slurmd's NodeName therefore, my *question:* What is the best practice for excluding the master node from work? I personally primarily see the option to set the node into DOWN, DRAINED or RESERVED. Since we use ReturnToService=2, I guess DOWN is not the way to go. RESERVED fits with the second part "The node is in an advanced reservation and *not generally available*." and DRAINED "The node is unavailable for use per system administrator request." fits completely. So is *DRAINED* the correct setting in such a case? Best regards, Xaver

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error: unpack_header: protocol_version 9472 not supported
by Arnuld 24 Jun '24

24 Jun '24

I have built Slurm 23.11.7 on two machines. Both are running Ubuntu 22.04. While Slurm runs fine on one machine, on the 2nd machine it does not. First machine is both a controller and a node while the 2nd machine is just a node. On both machines, I built the Slurm debian package as per the Slurm docs instructions. Slurmd logs show this: error: unpack_header: protocol_version 9472 not supported error: unpacking header error: destroy_forward: no init error: slurm_receive_msg_and_forward: [[host-4.attlocal.net]:38960] failed: Message receive failure error: service_connection: slurm_receive_msg: Message receive failure debug: _service_connection: incomplete message

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Can Not Use A Single GPU for Multiple Jobs
by Arnuld 24 Jun '24

24 Jun '24

I have a machine with a quad-core CPU and an Nvidia GPU with 3500+ cores. I want to run around 10 jobs in parallel on the GPU (mostly are CUDA based jobs). PROBLEM: Each job asks for only 100 shards (runs usually for a minute or so), then I should be able to run 3500/100 = 35 jobs in parallel but slurm runs only 4 jobs in parallel keeping the rest in the queue. I have this in slurm.conf and gres.conf: # GPU GresTypes=gpu,shard # COMPUTE NODES PartitionName=pzero Nodes=ALL Default=YES MaxTime=INFINITE State=UP` PartitionName=pgpu Nodes=hostgpu MaxTime=INFINITE State=UP NodeName=hostgpu NodeAddr=x.x.x.x Gres=gpu:gtx_1080_ti:1,shard:3500 CPUs=4 Boards=1 SocketsPerBoard=1 CoresPerSocket=4 ThreadsPerCore=1 RealMemory=64255 State=UNKNOWN ---------------------- Name=gpu Type=gtx_1080_ti File=/dev/nvidia0 Count=1 Name=shard Count=3500 File=/dev/nvidia0

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How can I tell the OS that was used to build SLURM?
by Carl Ponder 20 Jun '24

20 Jun '24

We're seeing SLURM mis-behaving on one of your clusters, that runs Ubuntu 22.04. Ampng other problems, we see an error-message regarding a missing library version that would have been shipped on Ubuntu 20.04 not 22.04. It's not clear that the library is being called from a SLURM component or OpenMPI or something else. I'm able to read some of the SLURM configuration settings, but is there a way to tell what OS had been used to build it? I imagine that the build-log would show some system-detection steps that would expose that, but don't know if it's bundled with the rest of the SLURM install somewhere.

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how to safely rename a slurm user's name
by taleintervenor＠sjtu.edu.cn 20 Jun '24

20 Jun '24

Hello, I'd like to ask if there is any safe method to rename an existing slurm user to new username with the same uid? As for linux itself, it's quite common to have 2 user share the same uid. So if we already have 2 system users, for example Bob(uid=1500) and HPCBob(uid=1500), and the HPCBob is the existing slurm user, how can we rename it to Bob without lost of user's history job records or associations? Do we have to manually edit the slurm database?

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IMEX plugin in Slurm 24.05
by Taras Shapovalov 19 Jun '24

19 Jun '24

Hello, Does anyone know if there is any documentation about the NVIDIA IMEX plugin for Slurm 24.05? It is not even in man page for slurm.conf, though it is in the release notes. Best regards, Taras

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Help with slurmdbd and Slurmctld
by stth 18 Jun '24

18 Jun '24

Hello, I wanted help with a problem I have. I just updated my operation system and the slurmdbd and slurmctld is not working anymore. I get this Errors: slurmdbd: fatal: Database schema is too old for this version of Slurm to upgrade. slurmctld: fatal: Can not recover last_tres state, incompatible version, got 9472 need >= 9728 <= 10240,start with '-i' to ignore this. Warning: using -i will lose the data that can't be recovered. I hope someone can help !

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Unsupported RPC version by slurmctld 19.05.3 from client slurmd 22.05.11
by aladin＠jscc.ru 17 Jun '24

17 Jun '24

Hello! I have a question. I have the server 19.05.3. No chance to upgrade it. Have I any chance to connect new client 22.05.11? Here is log from server: [2024-06-14T15:20:40.345] debug: Unsupported RPC version 9728 msg type 0(0) [2024-06-14T15:20:40.345] error: g_slurm_auth_unpack: remote plugin_id 12340565 not found [2024-06-14T15:20:40.345] error: slurm_unpack_received_msg: Invalid Protocol Version 9728 from uid=-1 at 10.82.0.6:52170 [2024-06-14T15:20:40.345] error: slurm_unpack_received_msg: Incompatible versions of client and server code [2024-06-14T15:20:40.355] error: slurm_receive_msg [10.82.0.6:52170]: Unspecified error Regards, Oleg

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Node (anti?) Feature / attribute
by David Magda 17 Jun '24

17 Jun '24

Hello, What I’m looking for is a way for a node to continue to be in the same partition, and have the same QoS(es), but only be chosen if a particular capability is being asked for. This is because we are rolling something (OS upgrade) out slowly to a small batch of nodes at first, and then more and more over time, and do not want to interrupt users’ workflows: we want them to default the ‘current’ nodes and only land on the ‘special’ ones if requested. (At a certain point the ‘special’ ones will become the majority and we’d swap the behaviour.) Slurm has the well-known feature item that can be put on a node(s): > A comma-delimited list of arbitrary strings indicative of some characteristic associated with the node. There is no value or count associated with a feature at this time, a node either has a feature or it does not. A desired feature may contain a numeric component indicating, for example, processor speed but this numeric component will be considered to be part of the feature string. Features are intended to be used to filter nodes eligible to run jobs via the --constraintargument. By default a node has no features. Also see Gres for being able to have more control such as types and count. Using features is faster than scheduling against GRES but is limited to Boolean operations. https://slurm.schedmd.com/slurm.conf.html#OPT_Features So if there are (a bunch of) partitions, and nodes with-in those partitions, a job can be submitted to a partition and it can be run any any available node, or even be requested to run a particular node (--nodelist). With the above (and --constraint / --prefer), a particular sub-set of node(s) can be requested. But (AIUI) that sub-set is also available generally to everyone, even if a particular feature is not requested. Is there a way to tell Slurm to not schedule a job on a node UNLESS a flag or option is set? Or is it necessary to set up new partition(s) or QoS(es)? I see that AllowAccounts (and AllowGroups) is applicable only to Partitions, and not (AFAICT) on a per node basis. We’re currently on 22.05.x, but upgrading is fine. Regards, David

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Issue with starting slurmctld
by Rafał Lalik 17 Jun '24

17 Jun '24

Hello, I have encountered issues with running slurmctld. From logs, I see these errors: [2024-06-14T17:37:57.587] slurmctld version 24.05.0 started on cluster laura [2024-06-14T17:37:57.587] error: plugin_load_from_file: dlopen(/usr/lib64/slurm/jobacct_gather_cgroup.so): /usr/lib64/slurm/jobacct_gather_cgroup.so: undefined symbol: xcpuinfo_init [2024-06-14T17:37:57.587] error: Couldn't load specified plugin name for jobacct_gather/cgroup: Dlopen of plugin file failed [2024-06-14T17:37:57.587] error: cannot create jobacct_gather context for jobacct_gather/cgroup [2024-06-14T17:37:57.587] fatal: failed to initialize jobacct_gather plugin [2024-06-14T17:39:07.741] Not running as root. Can't drop supplementary groups Aftre setting #JobAcctGatherType= the problem changed to: [2024-06-14T17:39:07.742] slurmctld version 24.05.0 started on cluster laura [2024-06-14T17:39:07.742] error: plugin_load_from_file: dlopen(/usr/lib64/slurm/prep_script.so): /usr/lib64/slurm/prep_script.so: undefined symbol: send_slurmd_conf_lite [2024-06-14T17:39:07.742] error: Couldn't load specified plugin name for prep/script: Dlopen of plugin file failed [2024-06-14T17:39:07.742] error: prep_g_init: cannot create prep context for prep/script [2024-06-14T17:39:07.742] fatal: failed to initialize prep plugin I also tried that with git-master: [2024-06-14T17:48:21.691] Not running as root. Can't drop supplementary groups [2024-06-14T17:48:21.691] error: Job accounting information gathered, but not stored [2024-06-14T17:48:21.692] slurmctld version 24.11.0-0rc1 started on cluster laura [2024-06-14T17:48:21.692] error: plugin_load_from_file: dlopen(/usr/lib64/slurm/jobacct_gather_cgroup.so): /usr/lib64/slurm/jobacct_gather_cgroup.so: undefined symbol: xcpuinfo_init [2024-06-14T17:48:21.692] error: Couldn't load specified plugin name for jobacct_gather/cgroup: Dlopen of plugin file failed [2024-06-14T17:48:21.692] error: cannot create jobacct_gather context for jobacct_gather/cgroup [2024-06-14T17:48:21.692] fatal: failed to initialize jobacct_gather plugin Any idea what may be wrong? Regards, Rafał -- Dr. inż. Rafal Lalik Jagiellonian University Faculty of Physics, Astronomy and Applied Computer Science ul. prof. Stanisława Łojasiewicza 11 30-348 Kraków, Poland Room : B-2-62 E-mail : rafal.lalik(a)uj.edu.pl Tel : (+48) 012 664 4587

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