[slurm-users] prolog not passing env var to job

[Chin,David]

ahmet.mercan at uhem.itu.edu.tr wrote:
> Prolog and TaskProlog are different parameters and scripts. You should
> use the TaskProlog script to set env. variables.

Can you tell me how to do this for srun? E.g. users request an interactive shell:

    srun -n 1 -t 600 --pty /bin/bash

but the shell on the compute node does not have the env variables set.

I use the same prolog script as TaskProlog, which sets it properly for jobs submitted
with sbatch.

Thanks in advance,
    Dave Chin

--
David Chin, PhD (he/him)   Sr. SysAdmin, URCF, Drexel
dwc62 at drexel.edu                     215.571.4335 (o)
For URCF support: urcf-support at drexel.edu
https://proteusmaster.urcf.drexel.edu/urcfwiki
github:prehensilecode


________________________________
From: slurm-users <slurm-users-bounces at lists.schedmd.com> on behalf of mercan <ahmet.mercan at uhem.itu.edu.tr>
Sent: Friday, February 12, 2021 16:27
To: Slurm User Community List <slurm-users at lists.schedmd.com>; Herc Silverstein <herc.silverstein at schrodinger.com>; slurm-users at schedmd.com <slurm-users at schedmd.com>
Subject: Re: [slurm-users] prolog not passing env var to job

External.

Hi;

Prolog and TaskProlog are different parameters and scripts. You should
use the TaskProlog script to set env. variables.

Regards;

Ahmet M.




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