[slurm-users] [EXT] Re: slurmdbd does not work

Sat Dec 4 01:04:25 UTC 2021

Try installing the libmariadb-dev-compat package and trying the configure/make again. It provides "libmysqlclient.so", whereas libmariadb-dev provides "libmariadb.so"
________________________________
From: slurm-users <slurm-users-bounces at lists.schedmd.com> on behalf of Giuseppe G. A. Celano <giuseppegacelano at gmail.com>
Sent: Saturday, 4 December 2021 11:40
To: Slurm User Community List <slurm-users at lists.schedmd.com>
Subject: Re: [slurm-users] [EXT] Re: slurmdbd does not work

External email: Please exercise caution

________________________________
10.4.22

On Sat, Dec 4, 2021 at 1:35 AM Brian Andrus <toomuchit at gmail.com<mailto:toomuchit at gmail.com>> wrote:

Which version of Mariadb are you using?

Brian Andrus

On 12/3/2021 4:20 PM, Giuseppe G. A. Celano wrote:
After installation of libmariadb-dev, I have reinstalled the entire slurm with ./configure + options, make, and make install. Still, accounting_storage_mysql.so is missing.

On Sat, Dec 4, 2021 at 12:24 AM Sean Crosby <scrosby at unimelb.edu.au<mailto:scrosby at unimelb.edu.au>> wrote:
Did you run

./configure (with any other options you normally use)
make
make install

on your DBD server after you installed the mariadb-devel package?

________________________________
From: slurm-users <slurm-users-bounces at lists.schedmd.com<mailto:slurm-users-bounces at lists.schedmd.com>> on behalf of Giuseppe G. A. Celano <giuseppegacelano at gmail.com<mailto:giuseppegacelano at gmail.com>>
Sent: Saturday, 4 December 2021 10:07
To: Slurm User Community List <slurm-users at lists.schedmd.com<mailto:slurm-users at lists.schedmd.com>>
Subject: [EXT] Re: [slurm-users] slurmdbd does not work

External email: Please exercise caution

________________________________
The problem is the lack of /usr/lib/slurm/accounting_storage_mysql.so

I have installed many mariadb-related packages, but that file is not created by slurm after installation: is there a point in the documentation where the installation procedure for the database is made explicit?

On Fri, Dec 3, 2021 at 5:15 PM Brian Andrus <toomuchit at gmail.com<mailto:toomuchit at gmail.com>> wrote:

You will need to also reinstall/restart slurmdbd with the updated binary.

Look in the slurmdbd logs to see what is happening there. I suspect it had errors updating/creating the database and tables. If you have no data in it yet, you can just DROP the database and restart slurmdbd.

Brian Andrus

On 12/3/2021 6:42 AM, Giuseppe G. A. Celano wrote:
Thanks for the answer, Brian. I now added  --with-mysql_config=/etc/mysql/my.cnf, but the problem is still there and now also slurmctld does not work, with the error:

[2021-12-03T15:36:41.018] accounting_storage/slurmdbd: clusteracct_storage_p_register_ctld: Registering slurmctld at port 6817 with slurmdbd
[2021-12-03T15:36:41.019] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer
[2021-12-03T15:36:41.019] error: _slurm_persist_recv_msg: only read 150 of 2613 bytes
[2021-12-03T15:36:41.019] error: Sending PersistInit msg: No error
[2021-12-03T15:36:41.020] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer
[2021-12-03T15:36:41.020] error: _slurm_persist_recv_msg: only read 150 of 2613 bytes
[2021-12-03T15:36:41.020] error: Sending PersistInit msg: No error
[2021-12-03T15:36:41.020] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer
[2021-12-03T15:36:41.020] error: _slurm_persist_recv_msg: only read 150 of 2613 bytes
[2021-12-03T15:36:41.020] error: Sending PersistInit msg: No error
[2021-12-03T15:36:41.020] error: DBD_GET_TRES failure: No error
[2021-12-03T15:36:41.021] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer
[2021-12-03T15:36:41.021] error: _slurm_persist_recv_msg: only read 0 of 2613 bytes
[2021-12-03T15:36:41.021] error: Sending PersistInit msg: No error
[2021-12-03T15:36:41.021] error: DBD_GET_QOS failure: No error
[2021-12-03T15:36:41.021] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer
[2021-12-03T15:36:41.021] error: _slurm_persist_recv_msg: only read 150 of 2613 bytes
[2021-12-03T15:36:41.021] error: Sending PersistInit msg: No error
[2021-12-03T15:36:41.021] error: DBD_GET_USERS failure: No error
[2021-12-03T15:36:41.022] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer
[2021-12-03T15:36:41.022] error: _slurm_persist_recv_msg: only read 0 of 2613 bytes
[2021-12-03T15:36:41.022] error: Sending PersistInit msg: No error
[2021-12-03T15:36:41.022] error: DBD_GET_ASSOCS failure: No error
[2021-12-03T15:36:41.022] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer
[2021-12-03T15:36:41.022] error: _slurm_persist_recv_msg: only read 0 of 2613 bytes
[2021-12-03T15:36:41.022] error: Sending PersistInit msg: No error
[2021-12-03T15:36:41.022] error: DBD_GET_RES failure: No error
[2021-12-03T15:36:41.022] fatal: You are running with a database but for some reason we have no TRES from it.  This should only happen if the database is down and you don't have any state files.

On Thu, Dec 2, 2021 at 10:36 PM Brian Andrus <toomuchit at gmail.com<mailto:toomuchit at gmail.com>> wrote:

Your slurm needs built with the support. If you have mysql-devel installed it should pick it up, otherwise you can specify the location with --with-mysql when you configure/build slurm

Brian Andrus

On 12/2/2021 12:40 PM, Giuseppe G. A. Celano wrote:
Hi everyone,

I am having trouble getting slurmdbd to work. This is the error I get:

error: Couldn't find the specified plugin name for accounting_storage/mysql looking at all files
error: cannot find accounting_storage plugin for accounting_storage/mysql
error: cannot create accounting_storage context for accounting_storage/mysql
fatal: Unable to initialize accounting_storage/mysql accounting storage plugin

I have installed mysql (apt install mysql) on Ubuntu 20.04.03 and followed the instructions on the slurm website<https://slurm.schedmd.com/accounting.html>; mysql is running (port 3306) and these are the relevant parts in my .conf files:

slurm.conf

# LOGGING AND ACCOUNTING
AccountingStorageHost=localhost
AccountingStoragePort=3306
AccountingStorageType=accounting_storage/slurmdbd
AccountingStorageUser=slurm
JobCompType=jobcomp/none
JobAcctGatherFrequency=30
JobAcctGatherType=jobacct_gather/linux
SlurmctldDebug=info
SlurmctldLogFile=/var/log/slurmctld.log
SlurmdDebug=info
SlurmdLogFile=/var/log/slurmd.log

slurmdbd.conf

AuthType=auth/munge
DbdAddr=localhost
DbdHost=localhost
DbdPort=3306
LogFile=/var/log/slurmdbd.log
PidFile=/var/run/slurmdbd.pid
PluginDir=/usr/lib/slurm
SlurmUser=slurm
StoragePass=password
StorageType=accounting_storage/mysql
StorageUser=slurm
StorageLoc=slurm_acct_db

I changed the port to 3306 because otherwise slurmdbd could not communicate with mysql. If I run sacct, for example, I get:

sacct: error: _slurm_persist_recv_msg: read of fd 3 failed: No error
sacct: error: _slurm_persist_recv_msg: only read 126 of 2616 bytes
sacct: error: slurm_persist_conn_open: No response to persist_init
sacct: error: Sending PersistInit msg: No error
JobID           JobName  Partition    Account  AllocCPUS      State ExitCode
------------ ---------- ---------- ---------- ---------- ---------- --------
sacct: error: _slurm_persist_recv_msg: read of fd 3 failed: No error
sacct: error: _slurm_persist_recv_msg: only read 126 of 2616 bytes
sacct: error: Sending PersistInit msg: No error
sacct: error: DBD_GET_JOBS_COND failure: Unspecified error

Does anyone have a suggestion to solve this problem? Thank you very much.

Best,
Giuseppe
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