[slurm-users] Reset TMPDIR for All Jobs

[Brian Andrus]

Maybe too obvious, but have you checked your .bashrc, .bash_profile and 
such?

Brian Andrus

On 5/12/2020 10:27 AM, Ellestad, Erik wrote:
>
> Which SLURM prolog specifically?
>
> I’m not finding that to work for me in either task-prolog or prolog.
>
> SLURM_TMPDIR and TMPDIR are still both set to /tmp when I run a job.
>
> Erik
>
> --
>
> Erik Ellestad
>
> Wynton Cluster SysAdmin
>
> UCSF
>
> *From:* slurm-users <slurm-users-bounces at lists.schedmd.com> *On Behalf 
> Of *Roger Moye
> *Sent:* Tuesday, May 12, 2020 9:12 AM
> *To:* Slurm User Community List <slurm-users at lists.schedmd.com>
> *Subject:* Re: [slurm-users] Reset TMPDIR for All Jobs
>
> We had issues getting TMPDIR to work as well.  We finally did this in 
> our prolog:
>
> export SLURM_TMPDIR="/tmp/slurm/${SLURM_JOB_ID}"
>
> This works.
>
> -Roger
>
> *From:* slurm-users <slurm-users-bounces at lists.schedmd.com 
> <mailto:slurm-users-bounces at lists.schedmd.com>> *On Behalf Of 
> *Ellestad, Erik
> *Sent:* Tuesday, May 12, 2020 10:40 AM
> *To:* slurm-users at lists.schedmd.com <mailto:slurm-users at lists.schedmd.com>
> *Subject:* [slurm-users] Reset TMPDIR for All Jobs
>
> I was wanted to set TMPDIR from /tmp to a per job directory I create 
> in local /scratch/$SLURM_JOB_ID (for example)
>
> This bug suggests I should be able to do this in a task-prolog.
>
> https://bugs.schedmd.com/show_bug.cgi?id=2664 
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__bugs.schedmd.com_show-5Fbug.cgi-3Fid-3D2664&d=DwMFAg&c=iORugZls2LlYyCAZRB3XLg&r=Ct3zEADMmPgyUYfpHDJQWaWsE9mNbEHEhGxpsYoThbE&m=xPdUh7dM0hithU9gkyVB8sI8GVpqet6rKWAGEAyuPa4&s=6Zv-scnpqWg7bREwPfLGi8FJE8BOCCurK4pMiw91P84&e=>
>
> However adding the following to task-prolog doesn’t seem to affect the 
> variables the job script is running with.
>
> unset TMPDIR
>
> export TMPDIR=/scratch/$SLURM_JOB_ID
>
> It does work if it is done in the job script, rather than the task-prolog.
>
> Am I missing something?
>
> Erik
>
> --
>
> Erik Ellestad
>
> Wynton Cluster SysAdmin
>
> UCSF
>
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