[slurm-users] Job failure issue in Slurm

[sathish]

Hi Navin,

Was this working earlier or is this the first time are you trying ?
Are you using pam module ? if yes, try disabling the pam module and see
if it works.

Thanks
Sathish

On Thu, Jun 4, 2020 at 10:47 PM navin srivastava <navin.altair at gmail.com>
wrote:

> Hi Team,
>
> i am seeing a weird issue in my environment.
> one of the gaussian job is failing with the slurm within a minute after it
> go for the execution without writing anything and unable to figure out the
> reason.
> The same job works fine without slurm on the same node.
>
> slurmctld.log
>
> [2020-06-03T19:14:33.170] debug:  Job 1357498 has more than one partition
> (normal)(21052)
> [2020-06-03T19:14:33.170] debug:  Job 1357498 has more than one partition
> (normalGPUsmall)(21052)
> [2020-06-03T19:14:33.170] debug:  Job 1357498 has more than one partition
> (normalGPUbig)(21052)
> [2020-06-03T19:15:12.497] debug:  sched: JobId=1357498. State=PENDING.
> Reason=Priority, Priority=21052.
> Partition=normal,normalGPUsmall,normalGPUbig.
> [2020-06-03T19:15:12.497] debug:  sched: JobId=1357498. State=PENDING.
> Reason=Priority, Priority=21052.
> Partition=normal,normalGPUsmall,normalGPUbig.
> [2020-06-03T19:15:12.497] debug:  sched: JobId=1357498. State=PENDING.
> Reason=Priority, Priority=21052.
> Partition=normal,normalGPUsmall,normalGPUbig.
> [2020-06-03T19:16:12.626] debug:  sched: JobId=1357498. State=PENDING.
> Reason=Priority, Priority=21052.
> Partition=normal,normalGPUsmall,normalGPUbig.
> [2020-06-03T19:17:12.753] debug:  sched: JobId=1357498. State=PENDING.
> Reason=Priority, Priority=21052.
> Partition=normal,normalGPUsmall,normalGPUbig.
> [2020-06-03T19:18:12.882] debug:  sched: JobId=1357498. State=PENDING.
> Reason=Priority, Priority=21052.
> Partition=normal,normalGPUsmall,normalGPUbig.
> [2020-06-03T19:19:13.633] sched: Allocate JobID=1357498 NodeList=oled4
> #CPUs=4 Partition=normal
> [2020-06-04T12:25:36.961] _job_complete: JobID=1357498 State=0x1 NodeCnt=1
> WEXITSTATUS 2
> [2020-06-04T12:25:36.961]  SLURM Job_id=1357498 Name=job1 Ended, Run time
> 17:06:23, FAILED, ExitCode 2
> [2020-06-04T12:25:36.962] _job_complete: JobID=1357498 State=0x8005
> NodeCnt=1 done
>
> slurmd.log
>
> [2020-06-04T12:22:43.712] [1357498.batch] debug:  jag_common_poll_data:
> Task average frequency = 2769 pid 64084 mem size 4625724 23696420 time
> 164642.840000(164537+105)
> [2020-06-04T12:23:13.712] [1357498.batch] debug:  jag_common_poll_data:
> Task average frequency = 2769 pid 64084 mem size 4625724 23696420 time
> 164762.820000(164657+105)
> [2020-06-04T12:23:43.712] [1357498.batch] debug:  jag_common_poll_data:
> Task average frequency = 2769 pid 64084 mem size 4625724 23696420 time
> 164882.810000(164777+105)
> [2020-06-04T12:24:13.712] [1357498.batch] debug:  jag_common_poll_data:
> Task average frequency = 2769 pid 64084 mem size 4625724 23696420 time
> 165002.790000(164897+105)
> [2020-06-04T12:24:43.712] [1357498.batch] debug:  jag_common_poll_data:
> Task average frequency = 2769 pid 64084 mem size 4625724 23696420 time
> 165122.770000(165016+105)
> [2020-06-04T12:25:13.713] [1357498.batch] debug:  jag_common_poll_data:
> Task average frequency = 2769 pid 64084 mem size 4625724 23696420 time
> 165242.750000(165136+105)
> [2020-06-04T12:25:36.955] [1357498.batch] task 0 (64084) exited with exit
> code 2.
> [2020-06-04T12:25:36.955] [1357498.batch] debug:  task_p_post_term:
> affinity 1357498.4294967294, task 0
> [2020-06-04T12:25:36.960] [1357498.batch] debug:
>  step_terminate_monitor_stop signaling condition
> [2020-06-04T12:25:36.960] [1357498.batch] job 1357498 completed with
> slurm_rc = 0, job_rc = 512
> [2020-06-04T12:25:36.960] [1357498.batch] sending
> REQUEST_COMPLETE_BATCH_SCRIPT, error:0 status 512
> [2020-06-04T12:25:36.961] [1357498.batch] debug:  Message thread exited
> [2020-06-04T12:25:36.962] [1357498.batch] done with job
> [2020-06-04T12:25:36.962] debug:  task_p_slurmd_release_resources:
> affinity jobid 1357498
> [2020-06-04T12:25:36.962] debug:  credential for job 1357498 revoked
> [2020-06-04T12:25:36.963] debug:  Waiting for job 1357498's prolog to
> complete
> [2020-06-04T12:25:36.963] debug:  Finished wait for job 1357498's prolog
> to complete
> [2020-06-04T12:25:36.963] debug:  [job 1357498] attempting to run epilog
> [/etc/slurm/slurm.epilog.clean]
> [2020-06-04T12:25:37.254] debug:  completed epilog for jobid 1357498
> [2020-06-04T12:25:37.254] debug:  Job 1357498: sent epilog complete msg:
> rc = 0
>
> any suggestion will be welcome to troubleshoot this issue further.
>
> Regards
> Navin.
>
>
>
>

-- 
Regards.....
Sathish
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