[slurm-users] slurm-19.05 link error
Goetz, Patrick G
pgoetz at math.utexas.edu
Wed Jul 24 15:15:36 UTC 2019
Why are you searching your miniconda environment for library files? All
the HDF5 stuff from the Arch package gets installed in standard library
locations.
On 7/23/19 9:47 PM, Weiguang Chen wrote:
> Thanks for you fast response.
> I have installed hdf5 by pacman -S hdf5
> (base) [zznu at archlinux ~]$ locate hdf5
> /home/zznu/.virtualenvs/aiida/lib/python3.7/site-packages/scipy/io/matlab/tests/data/testhdf5_7.4_GLNX86.mat
> /home/zznu/magenta/lib/python2.7/site-packages/scipy/io/matlab/tests/data/testhdf5_7.4_GLNX86.mat
> /home/zznu/magenta/tensorflow/tensorflow/tensorflow/examples/learn/hdf5_classification.py
> /home/zznu/miniconda3/conda-meta/hdf5-1.10.4-hb1b8bf9_0.json
> /home/zznu/miniconda3/include/hdf5.h
> /home/zznu/miniconda3/include/hdf5.mod
> /home/zznu/miniconda3/include/hdf5_hl.h
> /home/zznu/miniconda3/include/vtk-8.2/vtk_hdf5.h
> /home/zznu/miniconda3/lib/libhdf5.a
> /home/zznu/miniconda3/lib/libhdf5.settings
> /home/zznu/miniconda3/lib/libhdf5.so
> /home/zznu/miniconda3/lib/libhdf5.so.103
> /home/zznu/miniconda3/lib/libhdf5.so.103.0.0
> /home/zznu/miniconda3/lib/libhdf5_cpp.a
> /home/zznu/miniconda3/lib/libhdf5_cpp.so
> /home/zznu/miniconda3/lib/libhdf5_cpp.so.103
> /home/zznu/miniconda3/lib/libhdf5_cpp.so.103.0.0
> /home/zznu/miniconda3/lib/libhdf5_fortran.a
> /home/zznu/miniconda3/lib/libhdf5_fortran.so
> /home/zznu/miniconda3/lib/libhdf5_fortran.so.100
> /home/zznu/miniconda3/lib/libhdf5_fortran.so.100.1.2
> /home/zznu/miniconda3/lib/libhdf5_hl.a
> /home/zznu/miniconda3/lib/libhdf5_hl.so
> /home/zznu/miniconda3/lib/libhdf5_hl.so.100
> /home/zznu/miniconda3/lib/libhdf5_hl.so.100.1.1
> /home/zznu/miniconda3/lib/libhdf5_hl_cpp.a
> /home/zznu/miniconda3/lib/libhdf5_hl_cpp.so
> /home/zznu/miniconda3/lib/libhdf5_hl_cpp.so.100
> /home/zznu/miniconda3/lib/libhdf5_hl_cpp.so.100.1.2
> /home/zznu/miniconda3/lib/libhdf5hl_fortran.a
> /home/zznu/miniconda3/lib/libhdf5hl_fortran.so
> /home/zznu/miniconda3/lib/libhdf5hl_fortran.so.100
> /home/zznu/miniconda3/lib/libhdf5hl_fortran.so.100.0.3
> /home/zznu/miniconda3/lib/cmake/vtk-8.2/Modules/vtkhdf5.cmake
> /home/zznu/miniconda3/lib/python3.7/site-packages/scipy/io/matlab/tests/data/testhdf5_7.4_GLNX86.mat
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0.tar.bz2
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/gif2h5
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h52gif
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5c++
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5cc
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5clear
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5copy
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5debug
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5diff
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5dump
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5fc
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5format_convert
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5import
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5jam
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5ls
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5mkgrp
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5perf_serial
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5redeploy
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5repack
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5repart
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5stat
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5unjam
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5watch
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5ACpublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5AbstractDs.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Apublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5ArrayType.h
>
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Epublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Exception.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDcore.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDdirect.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDfamily.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDlog.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDmpi.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDmpio.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDmulti.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDpublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDsec2.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDstdio.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FaccProp.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FcreatProp.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5File.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FloatType.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Fpublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Gpublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Group.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5IMpublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5IdComponent.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Include.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5IntType.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Ipublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5LDpublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5LTpublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5LaccProp.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5LcreatProp.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Library.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Location.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Lpublic.h
>
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Spublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5StrType.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5TBpublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Tpublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5VarLenType.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Zpublic.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5api_adpt.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5f90i.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5f90i_gen.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5overflow.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5pubconf.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5public.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5version.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5_gen.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5a.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5d.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5ds.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5e.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5f.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5fortkit.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5fortran_types.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5g.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5global.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5i.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5im.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5l.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5lib.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5lt.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5lt_const.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5o.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5p.mod
>
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/hdf5.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/hdf5_hl.h
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tstds.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tstds_tests.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tstimage.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tstimage_tests.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tstlite.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tstlite_tests.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tsttable.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tsttable_tests.mod
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/LICENSE.txt
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/about.json
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/files
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/git
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/has_prefix
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/hash_input.json
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/index.json
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/paths.json
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/repodata_record.json
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/run_exports.json
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/0001-ppc64le-uses-special-algorithm-for-long-double.patch
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/0002-long-double-conversion-tests-on-ppc64le.patch
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/README.md
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/TEST_FILES_LICENSE.md
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/bld.bat
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/build.sh
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/compound_fortran2003.f90
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/conda_build_config.yaml
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/h5_cmprss.c
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/h5_cmprss.f90
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/h5tutr_cmprss.cpp
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/meta.yaml
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/meta.yaml.template
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/osx_configure.patch
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/run_test.sh
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/test_Makefile.in.patch
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/yum_requirements.txt
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test/compound_fortran2003.f90
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test/h5_cmprss.c
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test/h5_cmprss.f90
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test/h5tutr_cmprss.cpp
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test/run_test.sh
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test/test_time_dependencies.json
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5.a
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5.settings
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5.so
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5.so.103
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5.so.103.0.0
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_cpp.a
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_cpp.so
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_cpp.so.103
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_cpp.so.103.0.0
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_fortran.a
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_fortran.so
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_fortran.so.100
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_fortran.so.100.1.2
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl.a
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl.so
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl.so.100
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl.so.100.1.1
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl_cpp.a
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl_cpp.so
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl_cpp.so.100
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl_cpp.so.100.1.2
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5hl_fortran.a
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5hl_fortran.so
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5hl_fortran.so.100
> /home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5hl_fortran.so.100.0.3
> /home/zznu/miniconda3/pkgs/scipy-1.2.1-py37h7c811a0_0/lib/python3.7/site-packages/scipy/io/matlab/tests/data/testhdf5_7.4_GLNX86.mat
> /home/zznu/miniconda3/pkgs/vtk-8.2.0-py37haa4764d_200/include/vtk-8.2/vtk_hdf5.h
> /home/zznu/miniconda3/pkgs/vtk-8.2.0-py37haa4764d_200/lib/cmake/vtk-8.2/Modules/vtkhdf5.cmake
> /usr/include/hdf5.h
> /usr/include/hdf5.mod
> /usr/include/hdf5_hl.h
> /usr/lib/libhdf5.a
> /usr/lib/libhdf5.settings
> /usr/lib/libhdf5.so
> /usr/lib/libhdf5.so.103
> /usr/lib/libhdf5.so.103.1.0
> /usr/lib/libhdf5_cpp.a
> /usr/lib/libhdf5_cpp.so
> /usr/lib/libhdf5_cpp.so.103
> /usr/lib/libhdf5_cpp.so.103.1.0
> /usr/lib/libhdf5_fortran.a
> /usr/lib/libhdf5_fortran.so
> /usr/lib/libhdf5_fortran.so.102
> /usr/lib/libhdf5_fortran.so.102.0.0
> /usr/lib/libhdf5_hl.a
> /usr/lib/libhdf5_hl.so
> /usr/lib/libhdf5_hl.so.100
> /usr/lib/libhdf5_hl.so.100.1.2
> /usr/lib/libhdf5_hl_cpp.a
> /usr/lib/libhdf5_hl_cpp.so
> /usr/lib/libhdf5_hl_cpp.so.100
> /usr/lib/libhdf5_hl_cpp.so.100.1.3
> /usr/lib/libhdf5_hl_fortran.a
> /usr/lib/libhdf5_hl_fortran.so
> /usr/lib/libhdf5hl_fortran.a
> /usr/lib/libhdf5hl_fortran.so
> /usr/lib/libhdf5hl_fortran.so.100
> /usr/lib/libhdf5hl_fortran.so.100.0.4
> /usr/lib/pkgconfig/hdf5-1.10.5.pc
> /usr/lib/pkgconfig/hdf5_cpp-1.10.5.pc
> /usr/lib/pkgconfig/hdf5_hl-1.10.5.pc
> /usr/lib/pkgconfig/hdf5_hl_cpp-1.10.5.pc
> /usr/share/doc/hdf5
> /usr/share/doc/hdf5/examples
> /usr/share/doc/hdf5/examples/README
> /usr/share/doc/hdf5/examples/c
> /usr/share/doc/hdf5/examples/c++
> /usr/share/doc/hdf5/examples/fortran
> /usr/share/doc/hdf5/examples/hl
> /usr/share/doc/hdf5/examples/run-all-ex.sh
> /usr/share/doc/hdf5/examples/c/h5_attribute.c
> /usr/share/doc/hdf5/examples/c/h5_chunk_read.c
> /usr/share/doc/hdf5/examples/c/h5_cmprss.c
> /usr/share/doc/hdf5/examples/c/h5_compound.c
> /usr/share/doc/hdf5/examples/c/h5_crtatt.c
> /usr/share/doc/hdf5/examples/c/h5_crtdat.c
> /usr/share/doc/hdf5/examples/c/h5_crtgrp.c
> /usr/share/doc/hdf5/examples/c/h5_crtgrpar.c
> /usr/share/doc/hdf5/examples/c/h5_crtgrpd.c
> /usr/share/doc/hdf5/examples/c/h5_drivers.c
> /usr/share/doc/hdf5/examples/c/h5_elink_unix2win.c
> /usr/share/doc/hdf5/examples/c/h5_extend.c
> /usr/share/doc/hdf5/examples/c/h5_extend_write.c
> /usr/share/doc/hdf5/examples/c/h5_extlink.c
> /usr/share/doc/hdf5/examples/c/h5_group.c
> /usr/share/doc/hdf5/examples/c/h5_mount.c
> /usr/share/doc/hdf5/examples/c/h5_rdwt.c
> /usr/share/doc/hdf5/examples/c/h5_read.c
> /usr/share/doc/hdf5/examples/c/h5_ref2reg.c
> /usr/share/doc/hdf5/examples/c/h5_reference.c
> /usr/share/doc/hdf5/examples/c/h5_select.c
> /usr/share/doc/hdf5/examples/c/h5_shared_mesg.c
> /usr/share/doc/hdf5/examples/c/h5_subset.c
> /usr/share/doc/hdf5/examples/c/h5_vds-eiger.c
> /usr/share/doc/hdf5/examples/c/h5_vds-exc.c
> /usr/share/doc/hdf5/examples/c/h5_vds-exclim.c
> /usr/share/doc/hdf5/examples/c/h5_vds-percival-unlim-maxmin.c
> /usr/share/doc/hdf5/examples/c/h5_vds-percival-unlim.c
> /usr/share/doc/hdf5/examples/c/h5_vds-percival.c
> /usr/share/doc/hdf5/examples/c/h5_vds-simpleIO.c
> /usr/share/doc/hdf5/examples/c/h5_vds.c
> /usr/share/doc/hdf5/examples/c/h5_write.c
> /usr/share/doc/hdf5/examples/c/ph5example.c
> /usr/share/doc/hdf5/examples/c/run-c-ex.sh
> /usr/share/doc/hdf5/examples/c++/chunks.cpp
> /usr/share/doc/hdf5/examples/c++/compound.cpp
> /usr/share/doc/hdf5/examples/c++/create.cpp
> /usr/share/doc/hdf5/examples/c++/extend_ds.cpp
> /usr/share/doc/hdf5/examples/c++/h5group.cpp
> /usr/share/doc/hdf5/examples/c++/h5tutr_cmprss.cpp
> /usr/share/doc/hdf5/examples/c++/h5tutr_crtatt.cpp
> /usr/share/doc/hdf5/examples/c++/h5tutr_crtdat.cpp
> /usr/share/doc/hdf5/examples/c++/h5tutr_crtgrp.cpp
> /usr/share/doc/hdf5/examples/c++/h5tutr_crtgrpar.cpp
> /usr/share/doc/hdf5/examples/c++/h5tutr_crtgrpd.cpp
> /usr/share/doc/hdf5/examples/c++/h5tutr_extend.cpp
> /usr/share/doc/hdf5/examples/c++/h5tutr_rdwt.cpp
> /usr/share/doc/hdf5/examples/c++/h5tutr_subset.cpp
> /usr/share/doc/hdf5/examples/c++/readdata.cpp
> /usr/share/doc/hdf5/examples/c++/run-c++-ex.sh
> /usr/share/doc/hdf5/examples/c++/writedata.cpp
> /usr/share/doc/hdf5/examples/fortran/compound.f90
> /usr/share/doc/hdf5/examples/fortran/compound_complex_fortran2003.f90
> /usr/share/doc/hdf5/examples/fortran/compound_fortran2003.f90
> /usr/share/doc/hdf5/examples/fortran/h5_cmprss.f90
> /usr/share/doc/hdf5/examples/fortran/h5_crtatt.f90
> /usr/share/doc/hdf5/examples/fortran/h5_crtdat.f90
> /usr/share/doc/hdf5/examples/fortran/h5_crtgrp.f90
> /usr/share/doc/hdf5/examples/fortran/h5_crtgrpar.f90
> /usr/share/doc/hdf5/examples/fortran/h5_crtgrpd.f90
> /usr/share/doc/hdf5/examples/fortran/h5_extend.f90
> /usr/share/doc/hdf5/examples/fortran/h5_rdwt.f90
> /usr/share/doc/hdf5/examples/fortran/h5_subset.f90
> /usr/share/doc/hdf5/examples/fortran/hyperslab.f90
> /usr/share/doc/hdf5/examples/fortran/mountexample.f90
> /usr/share/doc/hdf5/examples/fortran/nested_derived_type.f90
> /usr/share/doc/hdf5/examples/fortran/ph5example.f90
> /usr/share/doc/hdf5/examples/fortran/refobjexample.f90
> /usr/share/doc/hdf5/examples/fortran/refregexample.f90
> /usr/share/doc/hdf5/examples/fortran/run-fortran-ex.sh
> /usr/share/doc/hdf5/examples/fortran/rwdset_fortran2003.f90
> /usr/share/doc/hdf5/examples/fortran/selectele.f90
> /usr/share/doc/hdf5/examples/hl/c
> /usr/share/doc/hdf5/examples/hl/c++
> /usr/share/doc/hdf5/examples/hl/fortran
> /usr/share/doc/hdf5/examples/hl/run-hl-ex.sh
> /usr/share/doc/hdf5/examples/hl/c/ex_ds1.c
> /usr/share/doc/hdf5/examples/hl/c/ex_image1.c
> /usr/share/doc/hdf5/examples/hl/c/ex_image2.c
> /usr/share/doc/hdf5/examples/hl/c/ex_lite1.c
> /usr/share/doc/hdf5/examples/hl/c/ex_lite2.c
> /usr/share/doc/hdf5/examples/hl/c/ex_lite3.c
> /usr/share/doc/hdf5/examples/hl/c/ex_table_01.c
> /usr/share/doc/hdf5/examples/hl/c/ex_table_02.c
> /usr/share/doc/hdf5/examples/hl/c/ex_table_03.c
> /usr/share/doc/hdf5/examples/hl/c/ex_table_04.c
> /usr/share/doc/hdf5/examples/hl/c/ex_table_05.c
> /usr/share/doc/hdf5/examples/hl/c/ex_table_06.c
> /usr/share/doc/hdf5/examples/hl/c/ex_table_07.c
> /usr/share/doc/hdf5/examples/hl/c/ex_table_08.c
> /usr/share/doc/hdf5/examples/hl/c/ex_table_09.c
> /usr/share/doc/hdf5/examples/hl/c/ex_table_10.c
> /usr/share/doc/hdf5/examples/hl/c/ex_table_11.c
> /usr/share/doc/hdf5/examples/hl/c/ex_table_12.c
> /usr/share/doc/hdf5/examples/hl/c/image24pixel.txt
> /usr/share/doc/hdf5/examples/hl/c/image8.txt
> /usr/share/doc/hdf5/examples/hl/c/pal_rgb.h
> /usr/share/doc/hdf5/examples/hl/c/ptExampleFL.c
> /usr/share/doc/hdf5/examples/hl/c/run-hlc-ex.sh
> /usr/share/doc/hdf5/examples/hl/c++/ptExampleFL.cpp
> /usr/share/doc/hdf5/examples/hl/c++/run-hlc++-ex.sh
> /usr/share/doc/hdf5/examples/hl/fortran/ex_ds1.f90
> /usr/share/doc/hdf5/examples/hl/fortran/exlite.f90
> /usr/share/doc/hdf5/examples/hl/fortran/run-hlfortran-ex.sh
> /usr/share/licenses/hdf5
> /usr/share/licenses/hdf5/COPYING
>
> I just reinstalled hdf5, but the error still exist.
>
> Philip Kovacs <pkdevel at yahoo.com <mailto:pkdevel at yahoo.com>> 于2019年7月
> 24日周三 上午9:21写道：
>
> Looks like you need to install hdf5, development headers and libraries.
>
>
> On Tuesday, July 23, 2019, 08:52:06 PM EDT, Weiguang Chen
> <chenweiguang82 at gmail.com <mailto:chenweiguang82 at gmail.com>> wrote:
>
>
>
> Hi,
>
> I’m installing slurm in my Archlinux Server.
>
> At the beginning, I used AUR helper yaourt to install it.
>
> yaourt -S slurm-llnl
>
> But an error occur while compiling sh5util, as follow:
>
> libtool: link: gcc -DNUMA_VERSION1_COMPATIBILITY -march=x86-64
> -mtune=generic -O2 -pipe -pthread -ggdb3 -Wall -g -O1
> -fno-strict-aliasing -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl
>
> ,-z -Wl,relro -Wl,-z -Wl,lazy -o .libs/sh5util sh5util.o
> -Wl,-rpath=/usr/lib/slurm -Wl,--export-dynamic
> -L/home/zznu/miniconda3/lib -L../../../../../src/api/.libs
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/api/.libs/libslurmfull.so
> ../.libs/libhdf5_api.a -lm -ldl -lz -lpthread -lrt -lhdf5 -pthread
> -Wl,-rpath -Wl,/usr/lib/slurm
>
> /usr/bin/ld: sh5util.o: in function `_extract_series_table':
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1079:
> undefined reference to `H5PTopen'
>
> /usr/bin/ld: sh5util.o: in function `_extract_totals':
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:935: undefined reference to `H5PTget_num_packets'
>
> /usr/bin/ld:
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:939:
> undefined reference to `H5PTget_next'
>
> /usr/bin/ld: sh5util.o: in function `_extract_series_table':
>
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1089:
> undefined reference to `H5PTget_num_packets'
>
> /usr/bin/ld:
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1094:
> undefined reference to `H5PTget_next'
>
> /usr/bin/ld:
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1125:
> undefined reference to `H5PTclose'
>
> /usr/bin/ld:
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1126:
> undefined reference to `H5PTclose'
>
> /usr/bin/ld:
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1116:
> undefined reference to `H5PTclose'
>
> /usr/bin/ld: sh5util.o: in function `_extract_item_step':
>
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1551:
> undefined reference to `H5PTopen'
>
> /usr/bin/ld:
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1555:
> undefined reference to `H5PTget_num_packets' /usr/bin/ld:
> sh5util.o: in function `_item_analysis_uint':
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1275:
> undefined reference to `H5PTget_next' /usr/bin/ld: sh5util.o: in
> function `_extract_item_step':
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1590: undefined reference to `H5PTclose' /usr/bin/ld: sh5util.o: in function `_item_analysis_double': /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1376: undefined reference to `H5PTget_next'
>
> /usr/bin/ld: sh5util.o: in function `_extract_item_step':
>
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1605:
> undefined reference to `H5PTclose' collect2: error: ld returned 1
> exit status
>
> make[6]: *** [Makefile:572: sh5util] Error 1 make[6]: Leaving
> directory
> '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util'
> make[5]: *** [Makefile:722: all-recursive] Error 1
> make[5]:
> Leaving directory
> '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5'
> make[4]: *** [Makefile:521: all-recursive] Error 1 make[4]: Leaving
> directory
> '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile'
> make[3]: *** [Makefile:552: all-recursive] Error 1
> make[3]: Leaving directory
> '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins'
> make[2]: *** [Makefile:546: all-recursive] Error 1 make[2]: Leaving
> directory
> '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src'
> make[1]: *** [Makefile:674: all-recursive] Error 1 make[1]: Leaving directory '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1'
>
> Then, I directly download the source code from slurm official
> website, ./configure & make. Same error occored.
>
> I don’t know what the problem is, how to fix it.
>
> Thanks.
>
>
> --
> *****************************************************************************
> * Chen, Weiguang, Ph.D
> * Quantum Materials Research Center &
> * College of Physics and Electronic Engineering
> * No.6, Yingcai Road, Physics Building Rm#3511
> * Zhengzhou Normal University, Zhengzhou, 450044 Henan, China
> *
> * Tel: 86-13783677861; Fax: 86-371-65502273;
> * Email: chenweiguang82 at gmail.com
> <mailto:chenweiguang82 at gmail.com>; chenweiguang82 at 126.com
> <mailto:chenweiguang82 at 126.com>
> ****************************************************************************
>
>
>
>
> --
> *****************************************************************************
> * Chen, Weiguang, Ph.D
> * Quantum Materials Research Center &
> * College of Physics and Electronic Engineering
> * No.6, Yingcai Road, Physics Building Rm#3511
> * Zhengzhou Normal University, Zhengzhou, 450044 Henan, China
> *
> * Tel: 86-13783677861; Fax: 86-371-65502273;
> * Email: chenweiguang82 at gmail.com <mailto:chenweiguang82 at gmail.com>;
> chenweiguang82 at 126.com <mailto:chenweiguang82 at 126.com>
> ****************************************************************************
>
>
> This message is from an external sender. Learn more about why this
> matters. <https://ut.service-now.com/sp?id=kb_article&number=KB0011401>
>
>
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