[slurm-users] slurm-19.05 link error
Weiguang Chen
chenweiguang82 at gmail.com
Wed Jul 24 02:47:33 UTC 2019
Thanks for you fast response.
I have installed hdf5 by pacman -S hdf5
(base) [zznu at archlinux ~]$ locate hdf5
/home/zznu/.virtualenvs/aiida/lib/python3.7/site-packages/scipy/io/matlab/tests/data/testhdf5_7.4_GLNX86.mat
/home/zznu/magenta/lib/python2.7/site-packages/scipy/io/matlab/tests/data/testhdf5_7.4_GLNX86.mat
/home/zznu/magenta/tensorflow/tensorflow/tensorflow/examples/learn/hdf5_classification.py
/home/zznu/miniconda3/conda-meta/hdf5-1.10.4-hb1b8bf9_0.json
/home/zznu/miniconda3/include/hdf5.h
/home/zznu/miniconda3/include/hdf5.mod
/home/zznu/miniconda3/include/hdf5_hl.h
/home/zznu/miniconda3/include/vtk-8.2/vtk_hdf5.h
/home/zznu/miniconda3/lib/libhdf5.a
/home/zznu/miniconda3/lib/libhdf5.settings
/home/zznu/miniconda3/lib/libhdf5.so
/home/zznu/miniconda3/lib/libhdf5.so.103
/home/zznu/miniconda3/lib/libhdf5.so.103.0.0
/home/zznu/miniconda3/lib/libhdf5_cpp.a
/home/zznu/miniconda3/lib/libhdf5_cpp.so
/home/zznu/miniconda3/lib/libhdf5_cpp.so.103
/home/zznu/miniconda3/lib/libhdf5_cpp.so.103.0.0
/home/zznu/miniconda3/lib/libhdf5_fortran.a
/home/zznu/miniconda3/lib/libhdf5_fortran.so
/home/zznu/miniconda3/lib/libhdf5_fortran.so.100
/home/zznu/miniconda3/lib/libhdf5_fortran.so.100.1.2
/home/zznu/miniconda3/lib/libhdf5_hl.a
/home/zznu/miniconda3/lib/libhdf5_hl.so
/home/zznu/miniconda3/lib/libhdf5_hl.so.100
/home/zznu/miniconda3/lib/libhdf5_hl.so.100.1.1
/home/zznu/miniconda3/lib/libhdf5_hl_cpp.a
/home/zznu/miniconda3/lib/libhdf5_hl_cpp.so
/home/zznu/miniconda3/lib/libhdf5_hl_cpp.so.100
/home/zznu/miniconda3/lib/libhdf5_hl_cpp.so.100.1.2
/home/zznu/miniconda3/lib/libhdf5hl_fortran.a
/home/zznu/miniconda3/lib/libhdf5hl_fortran.so
/home/zznu/miniconda3/lib/libhdf5hl_fortran.so.100
/home/zznu/miniconda3/lib/libhdf5hl_fortran.so.100.0.3
/home/zznu/miniconda3/lib/cmake/vtk-8.2/Modules/vtkhdf5.cmake
/home/zznu/miniconda3/lib/python3.7/site-packages/scipy/io/matlab/tests/data/testhdf5_7.4_GLNX86.mat
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0.tar.bz2
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/gif2h5
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h52gif
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5c++
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5cc
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5clear
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5copy
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5debug
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5diff
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5dump
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5fc
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5format_convert
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5import
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5jam
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5ls
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5mkgrp
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5perf_serial
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5redeploy
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5repack
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5repart
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5stat
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5unjam
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/bin/h5watch
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5ACpublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5AbstractDs.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Apublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5ArrayType.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Epublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Exception.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDcore.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDdirect.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDfamily.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDlog.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDmpi.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDmpio.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDmulti.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDpublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDsec2.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FDstdio.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FaccProp.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FcreatProp.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5File.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5FloatType.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Fpublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Gpublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Group.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5IMpublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5IdComponent.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Include.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5IntType.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Ipublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5LDpublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5LTpublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5LaccProp.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5LcreatProp.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Library.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Location.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Lpublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Spublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5StrType.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5TBpublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Tpublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5VarLenType.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5Zpublic.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5api_adpt.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5f90i.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5f90i_gen.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5overflow.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5pubconf.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5public.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/H5version.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5_gen.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5a.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5d.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5ds.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5e.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5f.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5fortkit.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5fortran_types.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5g.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5global.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5i.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5im.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5l.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5lib.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5lt.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5lt_const.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5o.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/h5p.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/hdf5.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/hdf5_hl.h
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tstds.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tstds_tests.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tstimage.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tstimage_tests.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tstlite.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tstlite_tests.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tsttable.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/include/tsttable_tests.mod
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/LICENSE.txt
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/about.json
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/files
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/git
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/has_prefix
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/hash_input.json
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/index.json
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/paths.json
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/repodata_record.json
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/run_exports.json
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/0001-ppc64le-uses-special-algorithm-for-long-double.patch
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/0002-long-double-conversion-tests-on-ppc64le.patch
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/README.md
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/TEST_FILES_LICENSE.md
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/bld.bat
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/build.sh
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/compound_fortran2003.f90
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/conda_build_config.yaml
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/h5_cmprss.c
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/h5_cmprss.f90
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/h5tutr_cmprss.cpp
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/meta.yaml
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/meta.yaml.template
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/osx_configure.patch
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/run_test.sh
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/test_Makefile.in.patch
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/recipe/yum_requirements.txt
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test/compound_fortran2003.f90
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test/h5_cmprss.c
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test/h5_cmprss.f90
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test/h5tutr_cmprss.cpp
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test/run_test.sh
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/info/test/test_time_dependencies.json
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5.a
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5.settings
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5.so
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5.so.103
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5.so.103.0.0
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_cpp.a
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_cpp.so
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_cpp.so.103
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_cpp.so.103.0.0
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_fortran.a
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_fortran.so
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_fortran.so.100
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_fortran.so.100.1.2
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl.a
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl.so
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl.so.100
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl.so.100.1.1
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl_cpp.a
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl_cpp.so
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl_cpp.so.100
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5_hl_cpp.so.100.1.2
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5hl_fortran.a
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5hl_fortran.so
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5hl_fortran.so.100
/home/zznu/miniconda3/pkgs/hdf5-1.10.4-hb1b8bf9_0/lib/libhdf5hl_fortran.so.100.0.3
/home/zznu/miniconda3/pkgs/scipy-1.2.1-py37h7c811a0_0/lib/python3.7/site-packages/scipy/io/matlab/tests/data/testhdf5_7.4_GLNX86.mat
/home/zznu/miniconda3/pkgs/vtk-8.2.0-py37haa4764d_200/include/vtk-8.2/vtk_hdf5.h
/home/zznu/miniconda3/pkgs/vtk-8.2.0-py37haa4764d_200/lib/cmake/vtk-8.2/Modules/vtkhdf5.cmake
/usr/include/hdf5.h
/usr/include/hdf5.mod
/usr/include/hdf5_hl.h
/usr/lib/libhdf5.a
/usr/lib/libhdf5.settings
/usr/lib/libhdf5.so
/usr/lib/libhdf5.so.103
/usr/lib/libhdf5.so.103.1.0
/usr/lib/libhdf5_cpp.a
/usr/lib/libhdf5_cpp.so
/usr/lib/libhdf5_cpp.so.103
/usr/lib/libhdf5_cpp.so.103.1.0
/usr/lib/libhdf5_fortran.a
/usr/lib/libhdf5_fortran.so
/usr/lib/libhdf5_fortran.so.102
/usr/lib/libhdf5_fortran.so.102.0.0
/usr/lib/libhdf5_hl.a
/usr/lib/libhdf5_hl.so
/usr/lib/libhdf5_hl.so.100
/usr/lib/libhdf5_hl.so.100.1.2
/usr/lib/libhdf5_hl_cpp.a
/usr/lib/libhdf5_hl_cpp.so
/usr/lib/libhdf5_hl_cpp.so.100
/usr/lib/libhdf5_hl_cpp.so.100.1.3
/usr/lib/libhdf5_hl_fortran.a
/usr/lib/libhdf5_hl_fortran.so
/usr/lib/libhdf5hl_fortran.a
/usr/lib/libhdf5hl_fortran.so
/usr/lib/libhdf5hl_fortran.so.100
/usr/lib/libhdf5hl_fortran.so.100.0.4
/usr/lib/pkgconfig/hdf5-1.10.5.pc
/usr/lib/pkgconfig/hdf5_cpp-1.10.5.pc
/usr/lib/pkgconfig/hdf5_hl-1.10.5.pc
/usr/lib/pkgconfig/hdf5_hl_cpp-1.10.5.pc
/usr/share/doc/hdf5
/usr/share/doc/hdf5/examples
/usr/share/doc/hdf5/examples/README
/usr/share/doc/hdf5/examples/c
/usr/share/doc/hdf5/examples/c++
/usr/share/doc/hdf5/examples/fortran
/usr/share/doc/hdf5/examples/hl
/usr/share/doc/hdf5/examples/run-all-ex.sh
/usr/share/doc/hdf5/examples/c/h5_attribute.c
/usr/share/doc/hdf5/examples/c/h5_chunk_read.c
/usr/share/doc/hdf5/examples/c/h5_cmprss.c
/usr/share/doc/hdf5/examples/c/h5_compound.c
/usr/share/doc/hdf5/examples/c/h5_crtatt.c
/usr/share/doc/hdf5/examples/c/h5_crtdat.c
/usr/share/doc/hdf5/examples/c/h5_crtgrp.c
/usr/share/doc/hdf5/examples/c/h5_crtgrpar.c
/usr/share/doc/hdf5/examples/c/h5_crtgrpd.c
/usr/share/doc/hdf5/examples/c/h5_drivers.c
/usr/share/doc/hdf5/examples/c/h5_elink_unix2win.c
/usr/share/doc/hdf5/examples/c/h5_extend.c
/usr/share/doc/hdf5/examples/c/h5_extend_write.c
/usr/share/doc/hdf5/examples/c/h5_extlink.c
/usr/share/doc/hdf5/examples/c/h5_group.c
/usr/share/doc/hdf5/examples/c/h5_mount.c
/usr/share/doc/hdf5/examples/c/h5_rdwt.c
/usr/share/doc/hdf5/examples/c/h5_read.c
/usr/share/doc/hdf5/examples/c/h5_ref2reg.c
/usr/share/doc/hdf5/examples/c/h5_reference.c
/usr/share/doc/hdf5/examples/c/h5_select.c
/usr/share/doc/hdf5/examples/c/h5_shared_mesg.c
/usr/share/doc/hdf5/examples/c/h5_subset.c
/usr/share/doc/hdf5/examples/c/h5_vds-eiger.c
/usr/share/doc/hdf5/examples/c/h5_vds-exc.c
/usr/share/doc/hdf5/examples/c/h5_vds-exclim.c
/usr/share/doc/hdf5/examples/c/h5_vds-percival-unlim-maxmin.c
/usr/share/doc/hdf5/examples/c/h5_vds-percival-unlim.c
/usr/share/doc/hdf5/examples/c/h5_vds-percival.c
/usr/share/doc/hdf5/examples/c/h5_vds-simpleIO.c
/usr/share/doc/hdf5/examples/c/h5_vds.c
/usr/share/doc/hdf5/examples/c/h5_write.c
/usr/share/doc/hdf5/examples/c/ph5example.c
/usr/share/doc/hdf5/examples/c/run-c-ex.sh
/usr/share/doc/hdf5/examples/c++/chunks.cpp
/usr/share/doc/hdf5/examples/c++/compound.cpp
/usr/share/doc/hdf5/examples/c++/create.cpp
/usr/share/doc/hdf5/examples/c++/extend_ds.cpp
/usr/share/doc/hdf5/examples/c++/h5group.cpp
/usr/share/doc/hdf5/examples/c++/h5tutr_cmprss.cpp
/usr/share/doc/hdf5/examples/c++/h5tutr_crtatt.cpp
/usr/share/doc/hdf5/examples/c++/h5tutr_crtdat.cpp
/usr/share/doc/hdf5/examples/c++/h5tutr_crtgrp.cpp
/usr/share/doc/hdf5/examples/c++/h5tutr_crtgrpar.cpp
/usr/share/doc/hdf5/examples/c++/h5tutr_crtgrpd.cpp
/usr/share/doc/hdf5/examples/c++/h5tutr_extend.cpp
/usr/share/doc/hdf5/examples/c++/h5tutr_rdwt.cpp
/usr/share/doc/hdf5/examples/c++/h5tutr_subset.cpp
/usr/share/doc/hdf5/examples/c++/readdata.cpp
/usr/share/doc/hdf5/examples/c++/run-c++-ex.sh
/usr/share/doc/hdf5/examples/c++/writedata.cpp
/usr/share/doc/hdf5/examples/fortran/compound.f90
/usr/share/doc/hdf5/examples/fortran/compound_complex_fortran2003.f90
/usr/share/doc/hdf5/examples/fortran/compound_fortran2003.f90
/usr/share/doc/hdf5/examples/fortran/h5_cmprss.f90
/usr/share/doc/hdf5/examples/fortran/h5_crtatt.f90
/usr/share/doc/hdf5/examples/fortran/h5_crtdat.f90
/usr/share/doc/hdf5/examples/fortran/h5_crtgrp.f90
/usr/share/doc/hdf5/examples/fortran/h5_crtgrpar.f90
/usr/share/doc/hdf5/examples/fortran/h5_crtgrpd.f90
/usr/share/doc/hdf5/examples/fortran/h5_extend.f90
/usr/share/doc/hdf5/examples/fortran/h5_rdwt.f90
/usr/share/doc/hdf5/examples/fortran/h5_subset.f90
/usr/share/doc/hdf5/examples/fortran/hyperslab.f90
/usr/share/doc/hdf5/examples/fortran/mountexample.f90
/usr/share/doc/hdf5/examples/fortran/nested_derived_type.f90
/usr/share/doc/hdf5/examples/fortran/ph5example.f90
/usr/share/doc/hdf5/examples/fortran/refobjexample.f90
/usr/share/doc/hdf5/examples/fortran/refregexample.f90
/usr/share/doc/hdf5/examples/fortran/run-fortran-ex.sh
/usr/share/doc/hdf5/examples/fortran/rwdset_fortran2003.f90
/usr/share/doc/hdf5/examples/fortran/selectele.f90
/usr/share/doc/hdf5/examples/hl/c
/usr/share/doc/hdf5/examples/hl/c++
/usr/share/doc/hdf5/examples/hl/fortran
/usr/share/doc/hdf5/examples/hl/run-hl-ex.sh
/usr/share/doc/hdf5/examples/hl/c/ex_ds1.c
/usr/share/doc/hdf5/examples/hl/c/ex_image1.c
/usr/share/doc/hdf5/examples/hl/c/ex_image2.c
/usr/share/doc/hdf5/examples/hl/c/ex_lite1.c
/usr/share/doc/hdf5/examples/hl/c/ex_lite2.c
/usr/share/doc/hdf5/examples/hl/c/ex_lite3.c
/usr/share/doc/hdf5/examples/hl/c/ex_table_01.c
/usr/share/doc/hdf5/examples/hl/c/ex_table_02.c
/usr/share/doc/hdf5/examples/hl/c/ex_table_03.c
/usr/share/doc/hdf5/examples/hl/c/ex_table_04.c
/usr/share/doc/hdf5/examples/hl/c/ex_table_05.c
/usr/share/doc/hdf5/examples/hl/c/ex_table_06.c
/usr/share/doc/hdf5/examples/hl/c/ex_table_07.c
/usr/share/doc/hdf5/examples/hl/c/ex_table_08.c
/usr/share/doc/hdf5/examples/hl/c/ex_table_09.c
/usr/share/doc/hdf5/examples/hl/c/ex_table_10.c
/usr/share/doc/hdf5/examples/hl/c/ex_table_11.c
/usr/share/doc/hdf5/examples/hl/c/ex_table_12.c
/usr/share/doc/hdf5/examples/hl/c/image24pixel.txt
/usr/share/doc/hdf5/examples/hl/c/image8.txt
/usr/share/doc/hdf5/examples/hl/c/pal_rgb.h
/usr/share/doc/hdf5/examples/hl/c/ptExampleFL.c
/usr/share/doc/hdf5/examples/hl/c/run-hlc-ex.sh
/usr/share/doc/hdf5/examples/hl/c++/ptExampleFL.cpp
/usr/share/doc/hdf5/examples/hl/c++/run-hlc++-ex.sh
/usr/share/doc/hdf5/examples/hl/fortran/ex_ds1.f90
/usr/share/doc/hdf5/examples/hl/fortran/exlite.f90
/usr/share/doc/hdf5/examples/hl/fortran/run-hlfortran-ex.sh
/usr/share/licenses/hdf5
/usr/share/licenses/hdf5/COPYING
I just reinstalled hdf5, but the error still exist.
Philip Kovacs <pkdevel at yahoo.com> 于2019年7月24日周三 上午9:21写道：
> Looks like you need to install hdf5, development headers and libraries.
>
>
> On Tuesday, July 23, 2019, 08:52:06 PM EDT, Weiguang Chen <
> chenweiguang82 at gmail.com> wrote:
>
>
>
> Hi,
>
>
>
> I’m installing slurm in my Archlinux Server.
>
> At the beginning, I used AUR helper yaourt to install it.
>
> yaourt -S slurm-llnl
>
> But an error occur while compiling sh5util, as follow:
>
> libtool: link: gcc -DNUMA_VERSION1_COMPATIBILITY -march=x86-64
> -mtune=generic -O2 -pipe -pthread -ggdb3 -Wall -g -O1 -fno-strict-aliasing
> -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl
>
> ,-z -Wl,relro -Wl,-z -Wl,lazy -o .libs/sh5util sh5util.o
> -Wl,-rpath=/usr/lib/slurm -Wl,--export-dynamic -L/home/zznu/miniconda3/lib
> -L../../../../../src/api/.libs
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/api/.libs/libslurmfull.so
> ../.libs/libhdf5_api.a -lm -ldl -lz -lpthread -lrt -lhdf5 -pthread
> -Wl,-rpath -Wl,/usr/lib/slurm
>
> /usr/bin/ld: sh5util.o: in function
> `_extract_series_table':
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1079:
> undefined reference to `H5PTopen'
>
> /usr/bin/ld: sh5util.o: in function
> `_extract_totals':
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:935:
> undefined reference to `H5PTget_num_packets'
>
> /usr/bin/ld:
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:939:
> undefined reference to `H5PTget_next'
>
> /usr/bin/ld: sh5util.o: in function `_extract_series_table':
>
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1089:
> undefined reference to `H5PTget_num_packets'
>
> /usr/bin/ld:
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1094:
> undefined reference to `H5PTget_next'
>
> /usr/bin/ld:
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1125:
> undefined reference to `H5PTclose'
>
> /usr/bin/ld:
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1126:
> undefined reference to `H5PTclose'
>
> /usr/bin/ld:
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1116:
> undefined reference to `H5PTclose'
>
> /usr/bin/ld: sh5util.o: in function `_extract_item_step':
>
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1551:
> undefined reference to `H5PTopen'
>
> /usr/bin/ld:
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1555:
> undefined reference to `H5PTget_num_packets' /usr/bin/ld: sh5util.o: in
> function
> `_item_analysis_uint':
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1275:
> undefined reference to `H5PTget_next' /usr/bin/ld:
> sh5util.o: in function
> `_extract_item_step':
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1590:
> undefined reference to `H5PTclose' /usr/bin/ld:
> sh5util.o: in function
> `_item_analysis_double':
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1376:
> undefined reference to `H5PTget_next'
>
> /usr/bin/ld: sh5util.o: in function `_extract_item_step':
>
> /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1605:
> undefined reference to `H5PTclose' collect2:
> error: ld returned 1 exit
> status
>
>
> make[6]: *** [Makefile:572: sh5util] Error
> 1
> make[6]: Leaving directory
> '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util'
> make[5]: *** [Makefile:722: all-recursive] Error
> 1
> make[5]: Leaving
> directory
> '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5'
> make[4]: *** [Makefile:521: all-recursive] Error
> 1
> make[4]: Leaving directory
> '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile'
> make[3]: *** [Makefile:552: all-recursive] Error
> 1
> make[3]: Leaving directory
> '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins'
> make[2]: *** [Makefile:546: all-recursive] Error
> 1
> make[2]: Leaving directory
> '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src'
> make[1]: ***
> [Makefile:674: all-recursive] Error
> 1
> make[1]: Leaving directory
> '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1'
>
>
>
> Then, I directly download the source code from slurm official website,
> ./configure & make. Same error occored.
>
> I don’t know what the problem is, how to fix it.
>
> Thanks.
>
> --
>
> *****************************************************************************
> * Chen, Weiguang, Ph.D
> * Quantum Materials Research Center &
> * College of Physics and Electronic Engineering
> * No.6, Yingcai Road, Physics Building Rm#3511
> * Zhengzhou Normal University, Zhengzhou, 450044 Henan, China
> *
> * Tel: 86-13783677861; Fax: 86-371-65502273;
> * Email: chenweiguang82 at gmail.com; chenweiguang82 at 126.com
> ****************************************************************************
>
>
>
--
*****************************************************************************
* Chen, Weiguang, Ph.D
* Quantum Materials Research Center &
* College of Physics and Electronic Engineering
* No.6, Yingcai Road, Physics Building Rm#3511
* Zhengzhou Normal University, Zhengzhou, 450044 Henan, China
*
* Tel: 86-13783677861; Fax: 86-371-65502273;
* Email: chenweiguang82 at gmail.com; chenweiguang82 at 126.com
****************************************************************************
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