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<p class="MsoNormal">Yes, sorry. It is <o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">mpirun -wdir "." ./parent<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I expected mpirun to pick up the job parameters from the SLURM_* environment variables created by sbatch.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thanks,<o:p></o:p></p>
<p class="MsoNormal">Kurt<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><b>From:</b> slurm-users <slurm-users-bounces@lists.schedmd.com>
<b>On Behalf Of </b>Ralph Castain<br>
<b>Sent:</b> Friday, March 11, 2022 3:48 PM<br>
<b>To:</b> Slurm User Community List <slurm-users@lists.schedmd.com><br>
<b>Subject:</b> [EXTERNAL] Re: [slurm-users] Reserving slots with sbatch and OpenMpi<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I assume you are running the job via mpirun? Can you share the mpirun cmd line?<o:p></o:p></p>
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<p class="MsoNormal">On Mar 11, 2022, at 11:31 AM, Mccall, Kurt E. (MSFC-EV41) <<a href="mailto:kurt.e.mccall@nasa.gov">kurt.e.mccall@nasa.gov</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal">With sbatch, what is the proper way to launch 5 tasks each on a single node, but reserve two slots on each node so that the original tasks can each create one new process using MPI_Comm_spawn?<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">I’ve tried various combinations of the sbatch arguments –nodes, --ntasks-per-node and –cpu-per-node, but all attempts result in this OpenMpi error message:<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"><b>“All nodes which are allocated for this job are already filled.”</b><o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">I expected the proper arguments to be –nodes=5 --ntasks=5 –cpus-per-task=2.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">The 5 original processes are created correctly, but it seems like MPI_Comm_spawn is causing the error message when it tries to allocate a CPU.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">I’m using slurm 20.11.8 and OpenMpi 4.1.2.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Thanks,<o:p></o:p></p>
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<p class="MsoNormal">Kurt<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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