<div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif">I have installed almost all of the possible packages, but that file doesn't show up:</div><div class="gmail_default" style="font-family:verdana,sans-serif"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif">libdbd-mariadb-perl/focal,now 1.11-3ubuntu2 amd64 [installed]<br>libmariadb-dev-compat/unknown,now 1:10.4.22+maria~focal amd64 [installed]<br>libmariadb-dev/unknown,now 1:10.4.22+maria~focal amd64 [installed]<br>libmariadb3-compat/unknown,now 1:10.4.22+maria~focal amd64 [installed]<br>libmariadb3/unknown,now 1:10.4.22+maria~focal amd64 [installed,automatic]<br>libmariadbclient18/unknown,now 1:10.4.22+maria~focal amd64 [installed]<br>libmariadbd-dev/unknown,now 1:10.4.22+maria~focal amd64 [installed]<br>libmariadbd19/unknown,now 1:10.4.22+maria~focal amd64 [installed]<br>mariadb-client-10.4/unknown,now 1:10.4.22+maria~focal amd64 [installed,automatic]<br>mariadb-client-core-10.4/unknown,now 1:10.4.22+maria~focal amd64 [installed]<br>mariadb-client/unknown,unknown,unknown,now 1:10.4.22+maria~focal all [installed]<br>mariadb-common/unknown,unknown,unknown,now 1:10.4.22+maria~focal all [installed]<br>mariadb-plugin-connect/unknown,now 1:10.4.22+maria~focal amd64 [installed]<br>mariadb-server-10.4/unknown,now 1:10.4.22+maria~focal amd64 [installed]<br>mariadb-server-core-10.4/unknown,now 1:10.4.22+maria~focal amd64 [installed]<br>mariadb-server/unknown,unknown,unknown,now 1:10.4.22+maria~focal all [installed]<br>odbc-mariadb/focal,now 3.1.4-1 amd64 [installed]<br></div><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sat, Dec 4, 2021 at 2:06 AM Sean Crosby <<a href="mailto:scrosby@unimelb.edu.au">scrosby@unimelb.edu.au</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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Try installing the libmariadb-dev-compat package and trying the configure/make again. It provides "libmysqlclient.so", whereas libmariadb-dev provides "libmariadb.so"<br>
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<div id="gmail-m_1122218515839274263divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" face="Calibri, sans-serif" color="#000000"><b>From:</b> slurm-users <<a href="mailto:slurm-users-bounces@lists.schedmd.com" target="_blank">slurm-users-bounces@lists.schedmd.com</a>> on behalf of Giuseppe G. A. Celano <<a href="mailto:giuseppegacelano@gmail.com" target="_blank">giuseppegacelano@gmail.com</a>><br>
<b>Sent:</b> Saturday, 4 December 2021 11:40<br>
<b>To:</b> Slurm User Community List <<a href="mailto:slurm-users@lists.schedmd.com" target="_blank">slurm-users@lists.schedmd.com</a>><br>
<b>Subject:</b> Re: [slurm-users] [EXT] Re: slurmdbd does not work</font>
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10.4.22</div>
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<div dir="ltr">On Sat, Dec 4, 2021 at 1:35 AM Brian Andrus <<a href="mailto:toomuchit@gmail.com" target="_blank">toomuchit@gmail.com</a>> wrote:<br>
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<p>Which version of Mariadb are you using?</p>
<p>Brian Andrus<br>
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<div>On 12/3/2021 4:20 PM, Giuseppe G. A. Celano wrote:<br>
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<div style="font-family:verdana,sans-serif">After installation of libmariadb-dev, I have reinstalled the entire slurm with ./configure + options, make, and make install. Still, accounting_storage_mysql.so is missing.
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<div dir="ltr">On Sat, Dec 4, 2021 at 12:24 AM Sean Crosby <<a href="mailto:scrosby@unimelb.edu.au" target="_blank">scrosby@unimelb.edu.au</a>> wrote:<br>
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Did you run</div>
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./configure (with any other options you normally use)</div>
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make</div>
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make install</div>
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on your DBD server after you installed the mariadb-devel package?<br>
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<font style="font-size:11pt" face="Calibri,
sans-serif" color="#000000"><b>From:</b> slurm-users <<a href="mailto:slurm-users-bounces@lists.schedmd.com" target="_blank">slurm-users-bounces@lists.schedmd.com</a>> on behalf of Giuseppe G. A.
Celano <<a href="mailto:giuseppegacelano@gmail.com" target="_blank">giuseppegacelano@gmail.com</a>><br>
<b>Sent:</b> Saturday, 4 December 2021 10:07<br>
<b>To:</b> Slurm User Community List <<a href="mailto:slurm-users@lists.schedmd.com" target="_blank">slurm-users@lists.schedmd.com</a>><br>
<b>Subject:</b> [EXT] Re: [slurm-users] slurmdbd does not work</font>
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The problem is the lack of /usr/lib/slurm/accounting_storage_mysql.so</div>
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<div style="font-family:verdana,sans-serif">I have installed many mariadb-related packages, but that file is not created by slurm after installation: is there a point in the documentation where the installation procedure for the database is made explicit?<br>
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<div dir="ltr">On Fri, Dec 3, 2021 at 5:15 PM Brian Andrus <<a href="mailto:toomuchit@gmail.com" target="_blank">toomuchit@gmail.com</a>> wrote:<br>
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<p>You will need to also reinstall/restart slurmdbd with the updated binary.</p>
<p>Look in the slurmdbd logs to see what is happening there. I suspect it had errors updating/creating the database and tables. If you have no data in it yet, you can just DROP the database and restart slurmdbd.</p>
<p>Brian Andrus<br>
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<div>On 12/3/2021 6:42 AM, Giuseppe G. A. Celano wrote:<br>
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<div style="font-family:verdana,sans-serif">Thanks for the answer, Brian. I now added --with-mysql_config=/etc/mysql/my.cnf, but the problem is still there and now also slurmctld does not work, with the error:</div>
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<div style="font-family:verdana,sans-serif">[2021-12-03T15:36:41.018] accounting_storage/slurmdbd: clusteracct_storage_p_register_ctld: Registering slurmctld at port 6817 with slurmdbd<br>
[2021-12-03T15:36:41.019] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer<br>
[2021-12-03T15:36:41.019] error: _slurm_persist_recv_msg: only read 150 of 2613 bytes<br>
[2021-12-03T15:36:41.019] error: Sending PersistInit msg: No error<br>
[2021-12-03T15:36:41.020] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer<br>
[2021-12-03T15:36:41.020] error: _slurm_persist_recv_msg: only read 150 of 2613 bytes<br>
[2021-12-03T15:36:41.020] error: Sending PersistInit msg: No error<br>
[2021-12-03T15:36:41.020] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer<br>
[2021-12-03T15:36:41.020] error: _slurm_persist_recv_msg: only read 150 of 2613 bytes<br>
[2021-12-03T15:36:41.020] error: Sending PersistInit msg: No error<br>
[2021-12-03T15:36:41.020] error: DBD_GET_TRES failure: No error<br>
[2021-12-03T15:36:41.021] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer<br>
[2021-12-03T15:36:41.021] error: _slurm_persist_recv_msg: only read 0 of 2613 bytes<br>
[2021-12-03T15:36:41.021] error: Sending PersistInit msg: No error<br>
[2021-12-03T15:36:41.021] error: DBD_GET_QOS failure: No error<br>
[2021-12-03T15:36:41.021] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer<br>
[2021-12-03T15:36:41.021] error: _slurm_persist_recv_msg: only read 150 of 2613 bytes<br>
[2021-12-03T15:36:41.021] error: Sending PersistInit msg: No error<br>
[2021-12-03T15:36:41.021] error: DBD_GET_USERS failure: No error<br>
[2021-12-03T15:36:41.022] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer<br>
[2021-12-03T15:36:41.022] error: _slurm_persist_recv_msg: only read 0 of 2613 bytes<br>
[2021-12-03T15:36:41.022] error: Sending PersistInit msg: No error<br>
[2021-12-03T15:36:41.022] error: DBD_GET_ASSOCS failure: No error<br>
[2021-12-03T15:36:41.022] error: _conn_readable: persistent connection for fd 9 experienced error[104]: Connection reset by peer<br>
[2021-12-03T15:36:41.022] error: _slurm_persist_recv_msg: only read 0 of 2613 bytes<br>
[2021-12-03T15:36:41.022] error: Sending PersistInit msg: No error<br>
[2021-12-03T15:36:41.022] error: DBD_GET_RES failure: No error<br>
[2021-12-03T15:36:41.022] fatal: You are running with a database but for some reason we have no TRES from it. This should only happen if the database is down and you don't have any state files.</div>
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<div dir="ltr">On Thu, Dec 2, 2021 at 10:36 PM Brian Andrus <<a href="mailto:toomuchit@gmail.com" target="_blank">toomuchit@gmail.com</a>> wrote:<br>
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<p>Your slurm needs built with the support. If you have mysql-devel installed it should pick it up, otherwise you can specify the location with --with-mysql when you configure/build slurm</p>
<p>Brian Andrus<br>
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<div>On 12/2/2021 12:40 PM, Giuseppe G. A. Celano wrote:<br>
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<div><span style="font-family:verdana,sans-serif">Hi everyone,<br>
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<div><span style="font-family:verdana,sans-serif">I am having trouble getting <i>
slurmdbd</i> to work. This is the error I get:</span></div>
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<div><span style="font-family:verdana,sans-serif"><i>error: Couldn't find the specified plugin name for accounting_storage/mysql looking at all files<br>
error: cannot find accounting_storage plugin for accounting_storage/mysql<br>
error: cannot create accounting_storage context for accounting_storage/mysql<br>
fatal: Unable to initialize accounting_storage/mysql accounting storage plugin</i></span></div>
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<div><span style="font-family:verdana,sans-serif">I have installed <i>mysql</i> (<i>apt install mysql</i>) on Ubuntu 20.04.03 and followed the instructions on the slurm
<a href="https://slurm.schedmd.com/accounting.html" target="_blank">website</a>; <i>
mysql</i> is running (<i>port 3306</i>) and these are the relevant parts in my <i>
.conf</i> files: <br>
</span></div>
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<div><span style="font-family:verdana,sans-serif"><i>slurm.conf</i><br>
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<div><span style="font-family:verdana,sans-serif"># LOGGING AND ACCOUNTING<br>
AccountingStorageHost=</span><span style="font-family:verdana,sans-serif">localhost<br>
AccountingStoragePort=3306<br>
AccountingStorageType=</span><span style="font-family:verdana,sans-serif">accounting_storage/slurmdbd<br>
AccountingStorageUser=slurm<br>
JobCompType=jobcomp/none<br>
JobAcctGatherFrequency=30<br>
JobAcctGatherType=jobacct_</span><span style="font-family:verdana,sans-serif">gather/linux<br>
SlurmctldDebug=info<br>
SlurmctldLogFile=/var/log/</span><span style="font-family:verdana,sans-serif">slurmctld.log<br>
SlurmdDebug=info<br>
SlurmdLogFile=/var/log/slurmd.</span><span style="font-family:verdana,sans-serif">log</span></div>
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</span></div>
<div><span style="font-family:verdana,sans-serif"><i>slurmdbd.conf</i><br>
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</span></div>
<div><span style="font-family:verdana,sans-serif">AuthType=auth/munge<br>
DbdAddr=localhost<br>
DbdHost=localhost<br>
DbdPort=3306<br>
LogFile=/var/log/slurmdbd.log<br>
PidFile=/var/run/slurmdbd.pid<br>
PluginDir=/usr/lib/slurm<br>
SlurmUser=slurm<br>
StoragePass=password<br>
StorageType=accounting_</span><span style="font-family:verdana,sans-serif">storage/mysql<br>
StorageUser=slurm <br>
StorageLoc=slurm_acct_db</span></div>
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</span></div>
<div><span style="font-family:verdana,sans-serif">I changed the port to 3306 because otherwise
<i>slurmdbd </i>could not communicate with <i>mysql</i>. If I run <i>sacct</i>, for example, I get:</span></div>
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<div><span style="font-family:verdana,sans-serif"><i>sacct: error: _slurm_persist_recv_msg: read of fd 3 failed: No error<br>
sacct: error: _slurm_persist_recv_msg: only read 126 of 2616 bytes<br>
sacct: error: slurm_persist_conn_open: No response to persist_init<br>
sacct: error: Sending PersistInit msg: No error<br>
JobID JobName Partition Account AllocCPUS State ExitCode <br>
------------ ---------- ---------- ---------- ---------- ---------- -------- <br>
sacct: error: _slurm_persist_recv_msg: read of fd 3 failed: No error<br>
sacct: error: _slurm_persist_recv_msg: only read 126 of 2616 bytes<br>
sacct: error: Sending PersistInit msg: No error<br>
sacct: error: DBD_GET_JOBS_COND failure: Unspecified error</i></span></div>
<div><span style="font-family:verdana,sans-serif"><i><br>
</i></span></div>
<div><span style="font-family:verdana,sans-serif">Does anyone have a suggestion to solve this problem? Thank you very much.</span></div>
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</span></div>
<div><span style="font-family:verdana,sans-serif">Best,</span></div>
<div><span style="font-family:verdana,sans-serif">Giuseppe</span></div>
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