<div dir="ltr"><div class="gmail_default" style="font-family:tahoma,sans-serif">Excuse me, my fault...</div><div class="gmail_default" style="font-family:tahoma,sans-serif">Please ignore that email.</div><div class="gmail_default" style="font-family:tahoma,sans-serif"><br clear="all"></div><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><font face="tahoma,sans-serif">Regards,<br>Mahmood</font><br><br><br></div></div></div><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, Sep 28, 2020 at 11:34 PM Mahmood Naderan <<a href="mailto:mahmood.nt@gmail.com">mahmood.nt@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div class="gmail_default" style="font-family:tahoma,sans-serif">Hi</div><div class="gmail_default" style="font-family:tahoma,sans-serif">With "cpu=48,mem=40G" limits and the following script</div><div class="gmail_default" style="font-family:tahoma,sans-serif"><br></div><div class="gmail_default" style="font-family:tahoma,sans-serif">#!/bin/bash<br>#SBATCH --job-name=gr<br>#SBATCH --output=my_gr.log<br>#SBATCH --partition=SEA<br>#SBATCH --account=fish<br>#SBATCH --mem=6GB<br>#SBATCH --nodes=4<br>#SBATCH --ntasks-per-node=20<br>mpirun -np $SLURM_NTASKS /share/apps/gromacs-2019.6/single/bin/gmx_mpi mdrun -v -ntomp 1 -deffnm nvt</div><div class="gmail_default" style="font-family:tahoma,sans-serif"><br></div><div class="gmail_default" style="font-family:tahoma,sans-serif"><br></div><div class="gmail_default" style="font-family:tahoma,sans-serif">I see that job goes to the pending state with the AssocGrpCpuLimit reason.</div><div class="gmail_default" style="font-family:tahoma,sans-serif">I expected to have 4 nodes each running 5 mpi processes.</div><div class="gmail_default" style="font-family:tahoma,sans-serif">Isn't that? So why has the CPU limit been exceeded?</div><div class="gmail_default" style="font-family:tahoma,sans-serif"><br></div><div class="gmail_default" style="font-family:tahoma,sans-serif"><br></div><div><div dir="ltr"><div dir="ltr"><font face="tahoma,sans-serif">Regards,<br>Mahmood</font><br><br><br></div></div></div></div>
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