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<p class="MsoNormal"><span style="color:#1F497D">Which SLURM prolog specifically?<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">I’m not finding that to work for me in either task-prolog or prolog.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">SLURM_TMPDIR and TMPDIR are still both set to /tmp when I run a job.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Erik<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Courier New";color:#1F497D">--<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";color:#1F497D">Erik Ellestad<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";color:#1F497D">Wynton Cluster SysAdmin<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";color:#1F497D">UCSF<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b>From:</b> slurm-users <slurm-users-bounces@lists.schedmd.com>
<b>On Behalf Of </b>Roger Moye<br>
<b>Sent:</b> Tuesday, May 12, 2020 9:12 AM<br>
<b>To:</b> Slurm User Community List <slurm-users@lists.schedmd.com><br>
<b>Subject:</b> Re: [slurm-users] Reset TMPDIR for All Jobs<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="color:#1F497D">We had issues getting TMPDIR to work as well. We finally did this in our prolog:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">export SLURM_TMPDIR="/tmp/slurm/${SLURM_JOB_ID}"<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">This works.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">-Roger<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b>From:</b> slurm-users <<a href="mailto:slurm-users-bounces@lists.schedmd.com">slurm-users-bounces@lists.schedmd.com</a>>
<b>On Behalf Of </b>Ellestad, Erik<br>
<b>Sent:</b> Tuesday, May 12, 2020 10:40 AM<br>
<b>To:</b> <a href="mailto:slurm-users@lists.schedmd.com">slurm-users@lists.schedmd.com</a><br>
<b>Subject:</b> [slurm-users] Reset TMPDIR for All Jobs<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I was wanted to set TMPDIR from /tmp to a per job directory I create in local /scratch/$SLURM_JOB_ID (for example)<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">This bug suggests I should be able to do this in a task-prolog.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__bugs.schedmd.com_show-5Fbug.cgi-3Fid-3D2664&d=DwMFAg&c=iORugZls2LlYyCAZRB3XLg&r=Ct3zEADMmPgyUYfpHDJQWaWsE9mNbEHEhGxpsYoThbE&m=xPdUh7dM0hithU9gkyVB8sI8GVpqet6rKWAGEAyuPa4&s=6Zv-scnpqWg7bREwPfLGi8FJE8BOCCurK4pMiw91P84&e=">https://bugs.schedmd.com/show_bug.cgi?id=2664</a><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">However adding the following to task-prolog doesn’t seem to affect the variables the job script is running with.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">unset TMPDIR<o:p></o:p></p>
<p class="MsoNormal">export TMPDIR=/scratch/$SLURM_JOB_ID<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">It does work if it is done in the job script, rather than the task-prolog.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Am I missing something?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Erik<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">--<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">Erik Ellestad<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">Wynton Cluster SysAdmin<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">UCSF<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p><span style="font-size:8.5pt;font-family:"Verdana",sans-serif"> -----------------------------------------------------------------------------------</span><o:p></o:p></p>
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