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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Thanks for the reply. I’m using 18.08.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">I’ve done some more digging and found that it’s not just one account but a load of newly created accounts which suffer from this problem.
Older accounts are OK, but new ones don’t work.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">In the simplest case a completely new account fails. It contains the expected .bashrc and .bash_profile and .bash_logout which are
copied from /etc/skel. I really can’t see what’s in any way different between those and the older accounts which still work.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Is there any way to turn up the debugging on srun to try to see what it’s attempting (and what might be failing)?<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Simon.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> slurm-users <slurm-users-bounces@lists.schedmd.com>
<b>On Behalf Of </b>William Brown<br>
<b>Sent:</b> 24 January 2020 17:21<br>
<b>To:</b> Slurm User Community List <slurm-users@lists.schedmd.com><br>
<b>Subject:</b> Re: [slurm-users] Srun not setting DISPLAY with --x11 for one account<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">There are differences for X11 between Slurm versions so it may help to know which version you have.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">I tried some of your commands on our slurm 19.05.3-2 cluster, and interestingly on the session on the compute node I don't see the cookie for the login node: This was with MobaXterm:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">[user@prdubrvm005 ~]$ xauth list<br>
<a href="http://prdubrvm005.research.rcsi.com/unix:10">prdubrvm005.research.rcsi.com/unix:10</a> MIT-MAGIC-COOKIE-1 2efc5dd851736e3848193f65d038eca8<br>
[user@prdubrvm005 ~]$ srun --pty --x11 --preserve-env /bin/bash<br>
[user@prdubrhpc1-02 ~]$ xauth list<br>
<a href="http://prdubrhpc1-02.research.rcsi.com/unix:95">prdubrhpc1-02.research.rcsi.com/unix:95</a> MIT-MAGIC-COOKIE-1 2efc5dd851736e3848193f65d038eca8<br>
[user@prdubrhpc1-02 ~]$ echo $DISPLAY<br>
localhost:95.0<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Any per-user problem would make me suspect the user having a different shell, or something in their login script. Can you make their .bashrc and .bash_profile just exit? Or look for hidden configuration files for <something> in their
home directory?<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">William<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Fri, 24 Jan 2020 at 16:05, Simon Andrews <<a href="mailto:simon.andrews@babraham.ac.uk">simon.andrews@babraham.ac.uk</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I have a weird problem which I can’t get to the bottom of.
<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">We have a cluster which allows users to start interactive sessions which forward any X11 sessions they generated on the head node. This generally works fine, but on the account
of one user it doesn’t work. The X11 connection to the head node is fine, but it won’t transfer to the compute node.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">The symptoms are shown below:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">A good user gets this:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[good@headnode ~]$ xauth list<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><a href="http://headnode.babraham.ac.uk/unix:12" target="_blank">headnode.babraham.ac.uk/unix:12</a> MIT-MAGIC-COOKIE-1 f04a2bf9a921a3357e44373655add14a<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[good@headnode ~]$ echo $DISPLAY<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">localhost:12.0<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[good@headnode ~]$ srun --pty -p interactive --x11 --preserve-env /bin/bash<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[good@compute ~]$ xauth list<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><a href="http://headnode.babraham.ac.uk/unix:12" target="_blank">headnode.babraham.ac.uk/unix:12</a> MIT-MAGIC-COOKIE-1 f04a2bf9a921a3357e44373655add14a<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">compute/unix:25 MIT-MAGIC-COOKIE-1 f04a2bf9a921a3357e44373655add14a<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[good@compute ~]$ echo $DISPLAY<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">localhost:25.0<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">So the cookie is copied from the head node and forwarded and the DISPLAY variable is updated.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">The bad user gets this:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[bad@headnode ~]$ xauth list<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><a href="http://headnode.babraham.ac.uk/unix:10" target="_blank">headnode.babraham.ac.uk/unix:10</a> MIT-MAGIC-COOKIE-1 c39a493a37132d308b37469d363d8692<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[bad@headnode ~]$ echo $DISPLAY<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">localhost:10.0<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[bad@headnode ~]$ srun --pty -p interactive --x11 --preserve-env /bin/bash<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[bad@compute ~]$ xauth list<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><a href="http://headnode.babraham.ac.uk/unix:10" target="_blank">headnode.babraham.ac.uk/unix:10</a> MIT-MAGIC-COOKIE-1 c39a493a37132d308b37469d363d8692<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[bad@compute ~]$ echo $DISPLAY<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">localhost:10.0<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">So the cookie isn’t copied and the DISPLAY isn’t updated. I can’t see any errors in the logs and I can’t see anything different about this account.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">If I do a straight forward ssh -Y from the head node to a compute node from the bad account then that works fine – it’s only whatever is specific about the way that srun forwards
X which fails.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Any ideas or suggestions for debugging would be appreciated as I’m running out of things to try!<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Simon.<o:p></o:p></p>
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