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<div dir="ltr" data-setdir="false">Looks like you need to install hdf5, development headers and libraries.</div><div dir="ltr" data-setdir="false"><br></div><div><br></div>
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On Tuesday, July 23, 2019, 08:52:06 PM EDT, Weiguang Chen <chenweiguang82@gmail.com> wrote:
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<div><div id="yiv5798785411"><div dir="ltr"><br><div class="yiv5798785411gmail_quote"><div dir="ltr"><p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">Hi,</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US"> </span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">I</span>’<span lang="EN-US">m installing slurm in my
Archlinux Server.</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">At the beginning, I used AUR helper yaourt to install it. </span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">yaourt -S slurm-llnl</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">But an error occur while compiling sh5util, as follow:</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">libtool: link: gcc -DNUMA_VERSION1_COMPATIBILITY -march=x86-64
-mtune=generic -O2 -pipe -pthread -ggdb3 -Wall -g -O1 -fno-strict-aliasing
-Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">,-z -Wl,relro -Wl,-z -Wl,lazy -o .libs/sh5util sh5util.o -Wl,-rpath=/usr/lib/slurm
-Wl,--export-dynamic -L/home/zznu/miniconda3/lib
-L../../../../../src/api/.libs
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/api/.libs/libslurmfull.so
../.libs/libhdf5_api.a -lm -ldl -lz -lpthread -lrt -lhdf5 -pthread -Wl,-rpath
-Wl,/usr/lib/slurm</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/usr/bin/ld: sh5util.o: in function
`_extract_series_table':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1079:
undefined reference to `H5PTopen'</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/usr/bin/ld: sh5util.o: in function
`_extract_totals':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:935:
undefined reference to `H5PTget_num_packets'</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/usr/bin/ld: /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:939:
undefined reference to `H5PTget_next'</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/usr/bin/ld: sh5util.o: in function `_extract_series_table':</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1089:
undefined reference to `H5PTget_num_packets'</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/usr/bin/ld:
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1094:
undefined reference to `H5PTget_next'</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/usr/bin/ld:
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1125:
undefined reference to `H5PTclose'</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/usr/bin/ld: /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1126:
undefined reference to `H5PTclose'</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/usr/bin/ld:
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1116:
undefined reference to `H5PTclose'</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/usr/bin/ld: sh5util.o: in function `_extract_item_step':</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1551:
undefined reference to `H5PTopen'</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/usr/bin/ld: /tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1555:
undefined reference to `H5PTget_num_packets' /usr/bin/ld:
sh5util.o: in function `_item_analysis_uint':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1275:
undefined reference to
`H5PTget_next'
/usr/bin/ld: sh5util.o: in function
`_extract_item_step':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1590:
undefined reference to `H5PTclose'
/usr/bin/ld:
sh5util.o: in function
`_item_analysis_double':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1376:
undefined reference to `H5PTget_next'</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/usr/bin/ld: sh5util.o: in function `_extract_item_step': </span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1605:
undefined reference to
`H5PTclose'
collect2: error: ld returned 1 exit
status
</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US">make[6]: *** [Makefile:572: sh5util] Error
1
make[6]: Leaving directory
'/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util'
make[5]: *** [Makefile:722: all-recursive] Error
1
make[5]:
Leaving directory
'/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5'
make[4]: *** [Makefile:521: all-recursive] Error
1
make[4]: Leaving directory
'/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile'
make[3]: *** [Makefile:552: all-recursive] Error
1
make[3]:
Leaving directory '/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins'
make[2]: *** [Makefile:546: all-recursive] Error
1
make[2]: Leaving directory
'/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src'
make[1]:
*** [Makefile:674: all-recursive] Error
1
make[1]: Leaving directory
'/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1'</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US" style="font-size:12pt;"> </span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US" style="font-size:12pt;">Then, I directly download the source code from slurm official website,
./configure & make. Same error occored.</span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US" style="font-size:12pt;">I don</span><span style="font-size:12pt;">’<span lang="EN-US">t know what the problem is, how
to fix it.</span></span></p>
<p class="yiv5798785411MsoNormal" style="margin:0cm 0cm 0.0001pt;text-align:justify;font-size:10.5pt;font-family:DengXian;"><span lang="EN-US" style="font-size:12pt;">Thanks.</span></p><div><br></div>-- <br><div dir="ltr" class="yiv5798785411m_-2119676598179053461gmail_signature"><div dir="ltr"><div>*****************************************************************************<br>* Chen, Weiguang, Ph.D<br>* Quantum Materials Research Center &<br>* College of Physics and Electronic Engineering<br>* No.6, Yingcai Road, Physics Building Rm#3511<br>* Zhengzhou Normal University, Zhengzhou, 450044 Henan, China<br>* <br>* Tel: 86-13783677861; Fax: 86-371-65502273;<br>* Email: <a rel="nofollow" ymailto="mailto:chenweiguang82@gmail.com" target="_blank" href="mailto:chenweiguang82@gmail.com">chenweiguang82@gmail.com</a>; <a rel="nofollow" ymailto="mailto:chenweiguang82@126.com" target="_blank" href="mailto:chenweiguang82@126.com">chenweiguang82@126.com</a><br>**************************************************************************** </div></div></div></div>
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