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<p>I guess mariadb-devel was not installed by the time another
person installed slurm. I have a bunch of slurm-* rpms I installed
using "yum localinstall ...". Should I installed them in another
way or remove slurm?<br>
</p>
The file accounting_storage_mysql.so is bythe way absent on the
machine.<br>
<br>
Thanks<br>
<div class="moz-cite-prefix">On 20/11/17 21:52, Lachlan Musicman
wrote:<br>
</div>
<blockquote
cite="mid:CAGBeqiMekYzoNF85a2ZaewcOda1LNuSYpD3G86unWDGJP=nomA@mail.gmail.com"
type="cite">
<div dir="ltr">
<div>
<div>Also - make sure you have MariaDB-devel when you make the
RPMs - that's the first bit. <br>
The second bit is you might have to find the
accounting_storage_mysql.so and place it in
/usr/lib64/slurm.<br>
<br>
I think it might end up in
/path/to/rpmbuild/BUILD/sec/plugins/accounting/.libs/ or
something like that<span class="gmail-im"></span></div>
<div><br>
</div>
<div>Cheers</div>
<div>L.<br>
</div>
<div><span class="gmail-im"></span></div>
</div>
</div>
<div class="gmail_extra"><br clear="all">
<div>
<div class="gmail_signature" data-smartmail="gmail_signature">
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>------<br>
"The antidote to apocalypticism is <strong>apocalyptic
civics</strong>. Apocalyptic civics is
the insistence that we cannot ignore the
truth, nor should we panic about it. It
is a shared consciousness that our
institutions have failed and our
ecosystem is collapsing, yet we are
still here — and we are creative agents
who can shape our destinies. Apocalyptic
civics is the conviction that the only
way out is through, and the only way
through is together. "<br>
<br>
<i>Greg Bloom</i> @greggish <a
moz-do-not-send="true"
href="https://twitter.com/greggish/status/873177525903609857"
target="_blank">https://twitter.com/greggish/status/873177525903609857</a><br>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<br>
<div class="gmail_quote">On 21 November 2017 at 06:35, Philip
Kovacs <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:pkdevel@yahoo.com" target="_blank">pkdevel@yahoo.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div>
<div
style="color:#000;background-color:#fff;font-family:Helvetica
Neue,Helvetica,Arial,Lucida
Grande,sans-serif;font-size:13px">
<div
id="m_-6920238970089115468yui_3_16_0_ym19_1_1511206144144_3768"><span>Try
adding this to your conf:</span></div>
<div
id="m_-6920238970089115468yui_3_16_0_ym19_1_1511206144144_3768"><span><br>
</span></div>
<div
id="m_-6920238970089115468yui_3_16_0_ym19_1_1511206144144_3768"><span
id="m_-6920238970089115468yui_3_16_0_ym19_1_1511206144144_4364"><font
id="m_-6920238970089115468yui_3_16_0_ym19_1_1511206144144_4626"
face="Courier New, courier, monaco, monospace,
sans-serif">PluginDir=/usr/lib64/slurm</font></span></div>
<div class="m_-6920238970089115468qtdSeparateBR"><br>
<br>
</div>
<div class="m_-6920238970089115468yahoo_quoted"
style="display:block">
<div style="font-family:Helvetica
Neue,Helvetica,Arial,Lucida
Grande,sans-serif;font-size:13px">
<div style="font-family:HelveticaNeue,Helvetica
Neue,Helvetica,Arial,Lucida
Grande,sans-serif;font-size:16px"><span class="">
<div dir="ltr"><font face="Arial" size="2"> On
Monday, November 20, 2017 6:48 AM, Juan A.
Cordero Varelaq <<a
moz-do-not-send="true"
href="mailto:bioinformatica-ibis@us.es"
target="_blank">bioinformatica-ibis@us.es</a>>
wrote:<br>
</font></div>
<br>
<br>
</span>
<div class="m_-6920238970089115468y_msg_container">
<div id="m_-6920238970089115468yiv6044690762">
<div><span class="">
<div>I did that but got the same errors.</div>
<div>slurmdbd.log contains by the way the
following:</div>
<blockquote>
<div><tt>[2017-11-20T12:39:04.178]
error: Couldn't find the specified
plugin name for
accounting_storage/mysql looking at
all files</tt><tt><br clear="none">
</tt><tt>[2017-11-20T12:39:04.179]
error: cannot find
accounting_storage plugin for
accounting_storage/mysql</tt><tt><br
clear="none">
</tt><tt>[2017-11-20T12:39:04.179]
error: cannot create
accounting_storage context for
accounting_storage/mysql</tt><tt><br
clear="none">
</tt><tt>[2017-11-20T12:39:04.179]
fatal: Unable to initialize
accounting_storage/mysql accounting
storage plugin</tt><br clear="none">
</div>
</blockquote>
<div>It seems it lacks the
accounting_storage_mysql.so:</div>
<blockquote>
<div><tt>$ ls
/usr/lib64/slurm/accounting_<wbr>storage_*</tt><tt><br
clear="none">
</tt><tt>/usr/lib64/slurm/accounting_<wbr>storage_filetxt.so
/usr/lib64/slurm/accounting_<wbr>storage_none.so
/usr/lib64/slurm/accounting_<wbr>storage_slurmdbd.so</tt></div>
</blockquote>
<div>However, I did install the slurm-sql
rpm package.</div>
<div>Any idea about what's failing?</div>
<div><br clear="none">
</div>
<div>Thanks<br clear="none">
</div>
</span>
<div
class="m_-6920238970089115468yiv6044690762yqt8019780185"
id="m_-6920238970089115468yiv6044690762yqt87584"><span class="">
<div
class="m_-6920238970089115468yiv6044690762moz-cite-prefix">On
20/11/17 12:11, Lachlan Musicman
wrote:<br clear="none">
</div>
</span>
<blockquote type="cite">
<div dir="ltr"><span class="">On 20
November 2017 at 20:50, Juan A.
Cordero Varelaq <span dir="ltr"><<a
moz-do-not-send="true"
rel="nofollow" shape="rect"
href="mailto:bioinformatica-ibis@us.es"
target="_blank">bioinformatica-ibis@us.es</a>></span>
wrote:<br clear="none">
</span>
<div
class="m_-6920238970089115468yiv6044690762gmail_extra">
<div
class="m_-6920238970089115468yiv6044690762gmail_quote">
<blockquote
class="m_-6920238970089115468yiv6044690762gmail_quote"
style="margin:0 0 0
.8ex;border-left:1px #ccc
solid;padding-left:1ex"><span
class=""> $ systemctl start
slurmdbd<br clear="none">
Job for slurmdbd.service
failed because the control
process exited with error
code. See "systemctl status
slurmdbd.service" and
"journalctl -xe" for details.<br
clear="none">
$ systemctl status
slurmdbd.service<br
clear="none">
● slurmdbd.service - Slurm
DBD accounting daemon<br
clear="none">
</span> Loaded: loaded
(/etc/systemd/system/slurmdbd.
service; enabled; vendor preset:
disabled)
<div>
<div class="h5"><br
clear="none">
Active: failed
(Result: exit-code) since
lun 2017-11-20 10:39:26 CET;
53s ago<br clear="none">
Process: 27592
ExecStart=/usr/sbin/slurmdbd
$SLURMDBD_OPTIONS
(code=exited,
status=1/FAILURE)<br
clear="none">
<br clear="none">
nov 20 10:39:26
login_node systemd[1]:
Starting Slurm DBD
accounting daemon...<br
clear="none">
nov 20 10:39:26
login_node systemd[1]:
slurmdbd.service: control
process exited, code=exited
status=1<br clear="none">
nov 20 10:39:26
login_node systemd[1]:
Failed to start Slurm DBD
accounting daemon.<br
clear="none">
nov 20 10:39:26
login_node systemd[1]: Unit
slurmdbd.service entered
failed state.<br
clear="none">
nov 20 10:39:26
login_node systemd[1]:
slurmdbd.service failed.<br
clear="none">
$ journalctl -xe<br
clear="none">
nov 20 10:39:26
login_node polkitd[1078]:
Registered Authentication
Agent for
unix-process:27586:119889015
(system bus name :1.871
[/usr/bin/pkttyagent
--notify-fd 5 --fallback],
object path /or<br
clear="none">
nov 20 10:39:26
login_node systemd[1]:
Starting Slurm DBD
accounting daemon...<br
clear="none">
-- Subject: Unit
slurmdbd.service has begun
start-up<br clear="none">
-- Defined-By: systemd<br
clear="none">
-- Support: <a
moz-do-not-send="true"
rel="nofollow"
shape="rect"
href="http://lists.freedesktop.org/mailman/listinfo/systemd-devel"
target="_blank">http://lists.freedesktop.org/m
ailman/listinfo/systemd-devel</a><br clear="none">
--<br clear="none">
-- Unit slurmdbd.service
has begun starting up.<br
clear="none">
nov 20 10:39:26
login_node systemd[1]:
slurmdbd.service: control
process exited, code=exited
status=1<br clear="none">
nov 20 10:39:26
login_node systemd[1]:
Failed to start Slurm DBD
accounting daemon.<br
clear="none">
-- Subject: Unit
slurmdbd.service has failed<br
clear="none">
-- Defined-By: systemd<br
clear="none">
-- Support: <a
moz-do-not-send="true"
rel="nofollow"
shape="rect"
href="http://lists.freedesktop.org/mailman/listinfo/systemd-devel"
target="_blank">http://lists.freedesktop.org/m
ailman/listinfo/systemd-devel</a><br clear="none">
--<br clear="none">
-- Unit slurmdbd.service
has failed.<br clear="none">
--<br clear="none">
-- The result is failed.<br
clear="none">
nov 20 10:39:26
login_node systemd[1]: Unit
slurmdbd.service entered
failed state.<br
clear="none">
nov 20 10:39:26
login_node systemd[1]:
slurmdbd.service failed.<br
clear="none">
nov 20 10:39:26
login_node polkitd[1078]:
Unregistered Authentication
Agent for
unix-process:27586:119889015
(system bus name :1.871,
object path
/org/freedesktop/PolicyKit1/Au
thenticationAgent,<br
clear="none">
nov 20 10:40:06
login_node gmetad[1519]:
data_thread() for [HPCSIE]
failed to contact node
192.168.2.10<br clear="none">
nov 20 10:40:06
login_node gmetad[1519]:
data_thread() got no answer
from any [HPCSIE] datasource<br
clear="none">
nov 20 10:40:13
login_node dhcpd[2320]:
DHCPREQUEST for 192.168.2.19
from XX:XX:XX:XX:XX:XX via
enp6s0f1<br clear="none">
nov 20 10:40:13
login_node dhcpd[2320]:
DHCPACK on 192.168.2.19 to
XX:XX:XX:XX:XX:XX via
enp6s0f1<br clear="none">
nov 20 10:40:39
login_node dhcpd[2320]:
DHCPREQUEST for 192.168.2.13
from XX:XX:XX:XX:XX:XX via
enp6s0f1<br clear="none">
nov 20 10:40:39
login_node dhcpd[2320]:
DHCPACK on 192.168.2.13 to
XX:XX:XX:XX:XX:XX via
enp6s0f1<br clear="none">
<br clear="none">
I've just found out the file
`/var/run/slurmdbd.pid` does
not even exist.<br
clear="none">
</div>
</div>
</blockquote>
<div>
<div class="h5">
<div><br clear="none">
</div>
<div><br clear="none">
</div>
<div>The pid file is the
"process id" - it's only
there if the process is
running. So when slurmdbd is
not running, it wont be
there. Supposedly. Sometimes
I do "touch
/var/run/slurmdbd.pid" and
try again?</div>
<div><br clear="none">
</div>
<div>I've also found that
using the host's short name
is preferable to localhost.
Make sure the host's short
name is in /etc/hosts too.</div>
<div><br clear="none">
</div>
<div>hostname -s <br
clear="none">
</div>
<div><br clear="none">
</div>
<div>will give you the short
name</div>
<div><br clear="none">
</div>
<div>Cheers</div>
<div>L.<br clear="none">
</div>
<div> </div>
</div>
</div>
</div>
</div>
</div>
</blockquote>
</div>
<br clear="none">
</div>
</div>
<br>
<br>
</div>
</div>
</div>
</div>
</div>
</div>
</blockquote>
</div>
<br>
</div>
</blockquote>
<br>
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